Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.98□□□□□ -2.09
SKA3Q8IX90 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SKA3Q8IX90 Z75746.1-201ENST00000440243 2080 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 RBBP8P1-201ENST00000449447 1844 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AL359851.1-201ENST00000569460 4997 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 OR4G2P-201ENST00000328113 903 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 RNU6-1120P-201ENST00000362988 108 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 RNU6-942P-201ENST00000363002 107 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 RNU6-1303P-201ENST00000364841 107 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 RNU5A-6P-201ENST00000384136 116 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 MIR221-201ENST00000385135 110 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 RNU6-1140P-201ENST00000410517 106 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 RNU4-55P-201ENST00000410731 137 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.97□□□□□ -2.09
SKA3Q8IX90 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC002486.1-201ENST00000435098 391 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.97□□□□□ -2.09
SKA3Q8IX90 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.97□□□□□ -2.09
SKA3Q8IX90 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.97□□□□□ -2.09
SKA3Q8IX90 RNU6-405P-201ENST00000516637 110 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 FAM92A1P1-201ENST00000528023 890 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 AL512310.1-201ENST00000548639 172 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC009063.1-201ENST00000563342 702 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 MIR4448-201ENST00000584360 86 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC008752.3-201ENST00000588113 712 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC078795.2-201ENST00000602835 1252 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC091805.2-201ENST00000603848 235 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 SNORD14A-201ENST00000606526 91 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 AC245008.1-201ENST00000608123 476 ntBASIC1.97□□□□□ -2.09
SKA3Q8IX90 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.96□□□□□ -2.09
SKA3Q8IX90 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC138393.1-203ENST00000327086 343 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 Y_RNA.1-201ENST00000352915 104 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 RNA5SP125-201ENST00000364843 120 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SKA3Q8IX90 RNU6-1103P-201ENST00000384150 107 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 BTF3P7-201ENST00000407097 488 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 RNU2-3P-201ENST00000410144 191 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 RNU6-607P-201ENST00000411283 108 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AL663109.1-201ENST00000411498 844 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 CYCSP33-201ENST00000414485 327 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC097463.2-201ENST00000421074 142 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC012308.1-201ENST00000451232 178 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AL356010.1-201ENST00000456364 102 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 DYNLL1P5-201ENST00000467158 270 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 RPS27P21-201ENST00000486977 252 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC018437.1-201ENST00000492214 406 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC008413.1-201ENST00000511864 177 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 RN7SKP219-201ENST00000516825 296 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AP003392.2-201ENST00000527269 208 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC079598.5-201ENST00000547460 117 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 MTATP6P3-201ENST00000581686 676 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 RNU6-91P-201ENST00000607774 107 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 uc_338.11-201ENST00000619132 160 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC026585.1-201ENST00000619582 524 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 AC244517.12-201ENST00000623581 663 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 MIR3529-201ENST00000637713 78 ntBASIC1.96□□□□□ -2.1
SKA3Q8IX90 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SKA3Q8IX90 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SKA3Q8IX90 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC1.96□□□□□ -2.1
SKA3Q8IX90 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SKA3Q8IX90 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
SKA3Q8IX90 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 MTND5P6-201ENST00000422338 1798 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 RNU6-552P-201ENST00000362869 119 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 SNORA3A-201ENST00000364113 130 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 RNU1-91P-201ENST00000364746 163 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 Y_RNA.381-201ENST00000365666 102 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 RNU6-1042P-201ENST00000384204 107 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 SNORD116-20-201ENST00000384529 92 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 RNU6-1127P-201ENST00000384580 107 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 RAP1BP3-201ENST00000407180 549 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 U6atac.2-201ENST00000408644 118 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 UBE2V1P10-201ENST00000414685 269 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 HMGB1P31-201ENST00000437242 427 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 RPL7P12-201ENST00000446719 750 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 MTCO2P18-201ENST00000457151 658 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC080013.2-201ENST00000460866 323 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 RPL7P43-201ENST00000478876 753 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC074344.1-201ENST00000512823 224 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC104136.1-201ENST00000512969 394 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 RNU5B-3P-201ENST00000516601 115 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 214 ms