Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
UBE3DQ7Z6J8 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.96□□□□□ -1.77
UBE3DQ7Z6J8 AL079305.1-201ENST00000623159 3008 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-50P-201ENST00000362356 103 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-858P-201ENST00000362436 107 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.446-201ENST00000384178 104 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-918P-201ENST00000391219 106 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 HLFP1-201ENST00000402375 499 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 RNA5SP104-201ENST00000410989 118 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC005042.3-201ENST00000453230 174 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 RNA5SP246-201ENST00000458909 119 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC091021.1-201ENST00000468051 388 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 RN7SL585P-201ENST00000470538 280 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 UQCRHP4-201ENST00000471686 272 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 RPS29P26-201ENST00000477483 171 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 RPS4XP22-201ENST00000480755 780 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC105137.1-201ENST00000484355 562 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC025445.1-201ENST00000502728 300 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC074133.1-201ENST00000515696 183 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AP003730.1-201ENST00000524605 285 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC233702.2-202ENST00000562547 291 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 RN7SL600P-201ENST00000581811 299 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC020895.1-201ENST00000595362 272 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC006001.4-201ENST00000622243 395 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 USP8P1-201ENST00000494673 3183 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 AC007656.2-201ENST00000624902 4547 ntBASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
UBE3DQ7Z6J8 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 MIR383-201ENST00000362257 73 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 SNORA31-201ENST00000362607 130 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-704P-201ENST00000364162 103 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RNU1-140P-201ENST00000365040 165 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.331-201ENST00000365267 102 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-213P-201ENST00000384051 104 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-1289P-201ENST00000384431 106 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 MIR141-201ENST00000384975 95 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-493P-201ENST00000391321 108 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.595-201ENST00000410403 105 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 VDAC1P3-201ENST00000434069 851 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AC006011.1-201ENST00000442758 349 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AC006517.1-201ENST00000480485 328 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AC074198.2-201ENST00000508153 258 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RN7SKP122-201ENST00000515923 296 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RNU7-200P-201ENST00000516105 62 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RNA5SP154-201ENST00000516193 111 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 IFITM8P-201ENST00000522529 394 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 ARF4P1-201ENST00000605447 541 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AC022441.3-201ENST00000605737 136 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 MIR7151-201ENST00000617477 60 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 MIR8059-201ENST00000620427 81 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 MIR7702-201ENST00000621931 59 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AC021753.1-201ENST00000635724 168 ntBASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
UBE3DQ7Z6J8 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 RNA5SP388-201ENST00000362584 119 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-884P-201ENST00000363889 107 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.304-201ENST00000365011 112 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.383-201ENST00000383855 97 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.418-201ENST00000384029 102 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 295 ms