Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AC006026.2-201ENST00000457376 180 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 MTND3P7-201ENST00000474435 343 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 OR11H5P-201ENST00000554039 926 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AC091544.4-201ENST00000555268 342 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AC233702.2-202ENST00000562547 291 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AC090897.2-201ENST00000581715 130 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AC064872.1-201ENST00000604823 1072 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 RMST_4.1-201ENST00000616886 107 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AL590808.1-201ENST00000618696 141 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AC026585.1-201ENST00000619582 524 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AC064859.1-201ENST00000624741 174 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 MIR219B-201ENST00000637023 88 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 CENPCP1-201ENST00000533085 2578 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 SNORA62.1-201ENST00000364287 154 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 RNA5SP126-201ENST00000365092 109 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 RNU6-74P-201ENST00000384235 107 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 SNORA3.2-201ENST00000408221 125 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 RN7SKP223-201ENST00000410582 62 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 RNU6-248P-201ENST00000410720 107 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 DPH3P2-201ENST00000422618 250 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 HMGB1P31-201ENST00000437242 427 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 RNA5SP269-201ENST00000459032 137 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 TRBV12-1-201ENST00000479785 344 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 RN7SL274P-201ENST00000492268 272 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 SNORA18.6-201ENST00000516792 115 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 RNU6-586P-201ENST00000517265 104 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 AC107953.1-201ENST00000522216 297 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 IMMP1LP2-201ENST00000552954 492 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 MIR5089-201ENST00000580047 84 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 CLIC4P2-201ENST00000601934 717 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 RMST_7.1-201ENST00000621935 268 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 AC011155.2-201ENST00000623202 216 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 U6.114-201ENST00000636407 96 ntBASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC40Q4G0X9 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 Y_RNA.40-201ENST00000362645 93 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 RNU6-1159P-201ENST00000362933 107 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 RNU4-91P-201ENST00000364778 135 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 SUMO2P12-201ENST00000405924 140 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 RAP1BP3-201ENST00000407180 549 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 RNU2-3P-201ENST00000410144 191 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 AL030996.1-201ENST00000411430 235 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 TOMM20P4-201ENST00000427861 435 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 AL139415.2-201ENST00000431968 163 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 RPS6P15-201ENST00000431996 751 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 MTCO3P9-201ENST00000506989 781 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 AC008549.1-201ENST00000512900 643 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 SNORD27.1-201ENST00000516319 72 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 RNA5SP137-201ENST00000516833 135 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 MIR4287-201ENST00000579398 78 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 SNRPGP19-201ENST00000603826 189 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 SEPT7P9-203ENST00000604116 343 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 Z94722.1-201ENST00000604328 474 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 SDR42E1P4-201ENST00000620894 481 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 DUXAP9-208ENST00000622815 614 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 AC120349.3-201ENST00000624377 529 ntBASIC2.16□□□□□ -2.06
CCDC40Q4G0X9 U3.4-201ENST00000363352 213 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 RNU6-108P-201ENST00000365558 107 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 MIR454-201ENST00000390180 115 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 RNU6-550P-201ENST00000391057 101 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 RNA5SP390-201ENST00000410191 113 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 RNU2-23P-201ENST00000410545 195 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 RNU6-607P-201ENST00000411283 108 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 MTND2P4-201ENST00000445034 1004 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 PMCHL2-203ENST00000457791 237 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 AL162395.1-201ENST00000457882 422 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 RNA5SP233-201ENST00000459153 113 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 AL121594.1-201ENST00000475906 575 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 AC034114.1-201ENST00000520293 285 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 DUXAP5-201ENST00000529668 529 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 AP002453.2-201ENST00000533503 320 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 MIR4775-201ENST00000581168 75 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 NIFKP6-201ENST00000598115 845 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 AL031274.2-201ENST00000599419 203 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 ELOCP5-201ENST00000604924 333 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms