Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 Z99571.1-201ENST00000636677 394 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 AL049737.1-201ENST00000413920 1403 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 MTCO1P18-201ENST00000455518 1419 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 AC005832.2-201ENST00000538921 1430 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 GDI2P1-201ENST00000429312 1336 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
COL7A1Q02388 RNU6-251P-201ENST00000363235 104 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 RNU6-1243P-201ENST00000364028 107 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 RNU1-36P-201ENST00000365130 165 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 RNU6-1335P-201ENST00000365426 107 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 RNU6-741P-201ENST00000383889 107 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 RNU1-39P-201ENST00000383897 165 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 RNU6-1035P-201ENST00000384477 107 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 MIR1262-201ENST00000408276 93 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.15□□□□□ -2.39
COL7A1Q02388 AC009518.2-201ENST00000418056 731 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 NANOGP2-201ENST00000435391 727 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 FGF7P5-201ENST00000441829 291 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 AC099513.1-201ENST00000490423 301 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 AC084024.2-201ENST00000503480 791 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 AC113420.1-201ENST00000507903 571 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 MTCYBP16-201ENST00000509187 1129 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.15□□□□□ -2.39
COL7A1Q02388 AC117525.1-201ENST00000515228 503 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 RNA5SP404-201ENST00000517118 132 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.15□□□□□ -2.39
COL7A1Q02388 AC090142.3-201ENST00000519012 385 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 AP001893.2-201ENST00000526949 202 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 ZNF705CP-201ENST00000530515 889 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.15□□□□□ -2.39
COL7A1Q02388 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC0.15□□□□□ -2.39
COL7A1Q02388 MIR4667-201ENST00000578933 66 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 BNIP3P27-201ENST00000599991 412 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 AC096586.1-201ENST00000610267 561 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.15□□□□□ -2.39
COL7A1Q02388 AC073308.1-201ENST00000623696 305 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.15□□□□□ -2.39
COL7A1Q02388 AC023934.1-201ENST00000574529 2389 ntBASIC0.15□□□□□ -2.39
COL7A1Q02388 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC0.14□□□□□ -2.39
COL7A1Q02388 SNORA25-201ENST00000384384 134 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 MIR649-201ENST00000384843 97 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 MT-TC-201ENST00000387405 66 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 SNORA40C-201ENST00000391285 128 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL121978.1-201ENST00000402778 359 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 RPS26P42-201ENST00000413485 326 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 GTF2IP20-201ENST00000431663 360 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AL353691.1-201ENST00000451332 387 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.14□□□□□ -2.39
COL7A1Q02388 MTND2P33-201ENST00000506452 1031 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC048346.1-201ENST00000510247 144 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC009646.1-201ENST00000510455 318 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 SMURF2P1-201ENST00000514992 481 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC090888.1-201ENST00000561335 1141 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC021171.1-201ENST00000603137 706 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AP003973.1-201ENST00000604639 691 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 NDUFA8P1-201ENST00000605525 367 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC008443.7-201ENST00000622195 246 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC080188.3-201ENST00000624842 748 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC0.14□□□□□ -2.39
COL7A1Q02388 U6.107-201ENST00000637108 79 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC092125.1-201ENST00000562568 1995 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RNU4-23P-201ENST00000362839 140 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RNU6-374P-201ENST00000364146 108 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 SNORD14D-201ENST00000384390 87 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RNU2-3P-201ENST00000410144 191 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL160275.3-201ENST00000423876 471 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC008267.5-201ENST00000424928 265 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC069257.2-201ENST00000441819 155 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 MTND1P33-201ENST00000446251 917 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 MTND5P8-201ENST00000449817 1083 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 OR6C5P-201ENST00000452388 923 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 NDUFB4P10-201ENST00000452541 359 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.14□□□□□ -2.39
COL7A1Q02388 HMGB1P30-201ENST00000492455 606 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC022483.1-201ENST00000514020 567 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RNU5A-7P-201ENST00000515979 116 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RNU6-165P-201ENST00000517170 99 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AP003049.1-201ENST00000529418 457 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.14□□□□□ -2.39
COL7A1Q02388 MIR3678-201ENST00000578455 94 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC073544.2-201ENST00000601155 540 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL031176.1-201ENST00000604554 466 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC016542.1-201ENST00000608259 493 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms