Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 LINC01399-202ENST00000458450 244 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 RPL27AP5-201ENST00000469428 449 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 RPS29P26-201ENST00000477483 171 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.4□□□□□ -1.86
COL4A3Q01955 GZMAP1-201ENST00000503054 631 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.4□□□□□ -1.86
COL4A3Q01955 AC006023.2-201ENST00000609916 167 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 AC130454.1-201ENST00000622948 401 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.4□□□□□ -1.86
COL4A3Q01955 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.4□□□□□ -1.86
COL4A3Q01955 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL4A3Q01955 Z83843.1-201ENST00000604070 3685 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
COL4A3Q01955 AC068647.1-201ENST00000489539 2265 ntBASIC3.4□□□□□ -1.87
COL4A3Q01955 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC3.4□□□□□ -1.87
COL4A3Q01955 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
COL4A3Q01955 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
COL4A3Q01955 RNU6-173P-201ENST00000364215 104 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 Y_RNA.562-201ENST00000384695 113 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 MIR521-1-201ENST00000384902 87 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 MIR548M-201ENST00000408260 86 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.39□□□□□ -1.87
COL4A3Q01955 AC004383.1-201ENST00000438135 289 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 U8.21-201ENST00000459536 136 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.39□□□□□ -1.87
COL4A3Q01955 AL512605.2-201ENST00000592972 256 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AL390123.1-201ENST00000603216 237 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AC123912.5-201ENST00000605470 343 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.39□□□□□ -1.87
COL4A3Q01955 AC244205.2-202ENST00000635781 342 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
COL4A3Q01955 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC3.39□□□□□ -1.87
COL4A3Q01955 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL4A3Q01955 AL513302.2-201ENST00000562313 1842 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.39□□□□□ -1.87
COL4A3Q01955 FAM35BP-202ENST00000497389 3337 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.39□□□□□ -1.87
COL4A3Q01955 MIR422A-201ENST00000362286 90 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 Y_RNA.33-201ENST00000362591 102 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 RNU6-1167P-201ENST00000363227 94 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 Y_RNA.183-201ENST00000363882 113 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 RNU6-1025P-201ENST00000410629 104 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.39□□□□□ -1.87
COL4A3Q01955 USP9YP7-201ENST00000436723 430 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AL589765.3-201ENST00000446084 462 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 USP9YP32-201ENST00000452432 430 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 RRN3P3-201ENST00000549207 578 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AC004024.1-201ENST00000549244 247 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A3Q01955 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A3Q01955 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.39□□□□□ -1.87
COL4A3Q01955 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A3Q01955 AC012433.1-201ENST00000588916 398 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AL158827.2-201ENST00000602494 330 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AC006557.5-201ENST00000603126 811 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.39□□□□□ -1.87
COL4A3Q01955 MIR8076-201ENST00000611401 83 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AC004852.3-201ENST00000614131 326 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 AL691447.3-201ENST00000635020 330 ntBASIC3.39□□□□□ -1.87
COL4A3Q01955 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A3Q01955 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.38□□□□□ -1.87
COL4A3Q01955 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.38□□□□□ -1.87
COL4A3Q01955 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.38□□□□□ -1.87
COL4A3Q01955 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.38□□□□□ -1.87
COL4A3Q01955 ASNSP1-201ENST00000518311 1939 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
COL4A3Q01955 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
COL4A3Q01955 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A3Q01955 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.38□□□□□ -1.87
COL4A3Q01955 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.38□□□□□ -1.87
COL4A3Q01955 RNU6-212P-201ENST00000362642 104 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 Y_RNA.117-201ENST00000363294 101 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 MIR628-201ENST00000385229 95 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
COL4A3Q01955 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
COL4A3Q01955 RNA5SP494-201ENST00000410653 129 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 EI24P1-201ENST00000416584 867 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 EIF4EP2-201ENST00000422816 654 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 AL513124.1-201ENST00000450410 614 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 MLLT10P2-201ENST00000506434 249 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 RNU6-182P-201ENST00000516970 105 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.38□□□□□ -1.87
COL4A3Q01955 HIGD1AP1-201ENST00000550979 275 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 AL137100.2-201ENST00000555786 315 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 AC002545.1-201ENST00000592511 181 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.38□□□□□ -1.87
COL4A3Q01955 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
COL4A3Q01955 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A3Q01955 Z75746.1-201ENST00000440243 2080 ntBASIC3.38□□□□□ -1.87
COL4A3Q01955 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A3Q01955 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A3Q01955 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.37□□□□□ -1.87
COL4A3Q01955 MIR412-201ENST00000362142 91 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 RNU6-200P-201ENST00000364743 107 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 RNU1-140P-201ENST00000365040 165 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 RNA5SP235-201ENST00000365411 114 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 SNORD56-201ENST00000413522 71 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 AL592148.1-201ENST00000413568 445 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 AC006989.1-201ENST00000427212 131 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms