Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL359547.2-201ENST00000615810 418 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 MIR7844-201ENST00000616161 122 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC017037.3-201ENST00000625016 472 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
FOXA1P55317 AP000648.3-201ENST00000623539 4507 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 RNU5E-1-201ENST00000362477 120 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 RNU5F-7P-201ENST00000363696 115 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 RNU6-457P-201ENST00000363999 107 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 RNU4-42P-201ENST00000364738 142 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.37□□□□□ -2.19
FOXA1P55317 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
FOXA1P55317 MRPL42P2-201ENST00000403169 426 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 Y_RNA.623-201ENST00000411128 95 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.37□□□□□ -2.19
FOXA1P55317 RPL23AP36-201ENST00000413895 458 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.37□□□□□ -2.19
FOXA1P55317 HIGD1AP15-201ENST00000416198 280 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC138623.1-201ENST00000418060 216 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AL365338.1-201ENST00000422282 858 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AL160275.3-201ENST00000423876 471 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AL513185.2-201ENST00000425543 193 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC137499.1-201ENST00000427602 88 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA1P55317 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA1P55317 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC1.37□□□□□ -2.19
FOXA1P55317 AL161788.1-201ENST00000441805 169 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
FOXA1P55317 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA1P55317 MTCO2P29-201ENST00000465212 189 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC117503.1-201ENST00000472241 394 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA1P55317 AC112206.3-201ENST00000514578 389 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA1P55317 SNORD53B-201ENST00000577887 78 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 HMGN1P30-201ENST00000589286 268 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC023043.2-201ENST00000589678 1026 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 DEFB131E-202ENST00000602581 683 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC018638.7-201ENST00000605836 1114 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC138749.5-201ENST00000611461 208 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC116165.2-201ENST00000616705 206 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC108479.2-201ENST00000617314 601 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC009878.1-201ENST00000621819 340 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AL391262.2-201ENST00000622466 494 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AC092656.1-203ENST00000624134 423 ntBASIC1.37□□□□□ -2.19
FOXA1P55317 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.37□□□□□ -2.19
FOXA1P55317 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
FOXA1P55317 RBBP8P1-201ENST00000449447 1844 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 MIR412-201ENST00000362142 91 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 RNU5E-5P-201ENST00000365379 116 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 MIR95-201ENST00000385072 81 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 SNORA67.6-201ENST00000391093 99 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 CISD1P1-201ENST00000393907 327 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AL356432.1-201ENST00000405809 419 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 RNU6-174P-201ENST00000410406 106 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC127391.1-201ENST00000411737 98 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
FOXA1P55317 EDDM3CP-201ENST00000415977 425 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 AL356583.2-201ENST00000426536 280 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.36□□□□□ -2.19
FOXA1P55317 AL353689.1-201ENST00000438895 199 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 snoU109.2-201ENST00000459316 135 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 snoU109.1-201ENST00000459339 135 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 MED28P2-201ENST00000475771 317 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC108078.2-201ENST00000510750 236 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 AC108729.3-201ENST00000513484 108 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 RNU6-123P-201ENST00000516163 102 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 SNORA31.24-201ENST00000517232 57 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 ADI1P3-201ENST00000549509 470 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 PSMA3P-201ENST00000555485 635 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.36□□□□□ -2.19
FOXA1P55317 AC136619.2-201ENST00000563361 631 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 AC022022.2-201ENST00000602989 360 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC112191.3-201ENST00000604371 277 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 CLPTM1LP1-201ENST00000604519 484 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC096772.1-201ENST00000609146 564 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC004223.4-201ENST00000612426 332 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC012409.4-201ENST00000612923 249 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 AC022202.1-201ENST00000613515 211 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.36□□□□□ -2.19
FOXA1P55317 AC099654.13-201ENST00000639774 207 ntBASIC1.36□□□□□ -2.19
FOXA1P55317 RNU6-942P-201ENST00000363002 107 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 SNORD114-19-201ENST00000363072 75 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 U8.3-201ENST00000363321 132 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 RNU6-1032P-201ENST00000384100 107 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 AL591034.2-201ENST00000402839 359 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 AL031779.1-201ENST00000415663 330 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 BTF3P4-201ENST00000418852 495 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA1P55317 ELOCP4-201ENST00000420090 333 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms