Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.41□□□□□ -2.02
SOX3P41225 AL139415.2-201ENST00000431968 163 ntBASIC2.41□□□□□ -2.02
SOX3P41225 AL161651.1-201ENST00000440882 223 ntBASIC2.41□□□□□ -2.02
SOX3P41225 AC092001.1-201ENST00000453012 261 ntBASIC2.41□□□□□ -2.02
SOX3P41225 AC233279.1-201ENST00000455300 423 ntBASIC2.41□□□□□ -2.02
SOX3P41225 snoU109.2-201ENST00000459316 135 ntBASIC2.41□□□□□ -2.02
SOX3P41225 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.41□□□□□ -2.02
SOX3P41225 AC069439.1-201ENST00000494739 167 ntBASIC2.41□□□□□ -2.02
SOX3P41225 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.41□□□□□ -2.02
SOX3P41225 AC113155.1-201ENST00000511141 769 ntBASIC2.41□□□□□ -2.02
SOX3P41225 SNORA14.1-201ENST00000516113 141 ntBASIC2.41□□□□□ -2.02
SOX3P41225 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.41□□□□□ -2.02
SOX3P41225 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.41□□□□□ -2.02
SOX3P41225 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.41□□□□□ -2.02
SOX3P41225 AC008739.2-201ENST00000597006 317 ntBASIC2.41□□□□□ -2.02
SOX3P41225 AC091152.3-201ENST00000604227 325 ntBASIC2.41□□□□□ -2.02
SOX3P41225 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.41□□□□□ -2.02
SOX3P41225 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.41□□□□□ -2.02
SOX3P41225 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.41□□□□□ -2.02
SOX3P41225 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.41□□□□□ -2.02
SOX3P41225 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.4□□□□□ -2.02
SOX3P41225 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.4□□□□□ -2.02
SOX3P41225 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
SOX3P41225 RNU6-942P-201ENST00000363002 107 ntBASIC2.4□□□□□ -2.03
SOX3P41225 RNU6-266P-201ENST00000364225 107 ntBASIC2.4□□□□□ -2.03
SOX3P41225 U3.12-201ENST00000364498 214 ntBASIC2.4□□□□□ -2.03
SOX3P41225 RNU6-1283P-201ENST00000365314 105 ntBASIC2.4□□□□□ -2.03
SOX3P41225 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
SOX3P41225 RNU1-109P-201ENST00000383960 147 ntBASIC2.4□□□□□ -2.03
SOX3P41225 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
SOX3P41225 AL139095.1-201ENST00000404326 391 ntBASIC2.4□□□□□ -2.03
SOX3P41225 RNU4-26P-201ENST00000410270 107 ntBASIC2.4□□□□□ -2.03
SOX3P41225 Y_RNA.615-201ENST00000410769 117 ntBASIC2.4□□□□□ -2.03
SOX3P41225 RNA5SP492-201ENST00000411330 114 ntBASIC2.4□□□□□ -2.03
SOX3P41225 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.4□□□□□ -2.03
SOX3P41225 AL358075.3-201ENST00000426289 226 ntBASIC2.4□□□□□ -2.03
SOX3P41225 MTND1P2-201ENST00000430604 821 ntBASIC2.4□□□□□ -2.03
SOX3P41225 MRPS10P2-201ENST00000431226 381 ntBASIC2.4□□□□□ -2.03
SOX3P41225 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.4□□□□□ -2.03
SOX3P41225 UBBP3-201ENST00000445497 241 ntBASIC2.4□□□□□ -2.03
SOX3P41225 HIGD1AP2-201ENST00000446367 280 ntBASIC2.4□□□□□ -2.03
SOX3P41225 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.4□□□□□ -2.03
SOX3P41225 HMGN2P26-201ENST00000463169 339 ntBASIC2.4□□□□□ -2.03
SOX3P41225 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.4□□□□□ -2.03
SOX3P41225 SRIP1-201ENST00000489235 288 ntBASIC2.4□□□□□ -2.03
SOX3P41225 RPL23AP94-201ENST00000512518 302 ntBASIC2.4□□□□□ -2.03
SOX3P41225 RNA5SP282-201ENST00000516355 108 ntBASIC2.4□□□□□ -2.03
SOX3P41225 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.4□□□□□ -2.03
SOX3P41225 AL391813.1-201ENST00000603098 260 ntBASIC2.4□□□□□ -2.03
SOX3P41225 AC092747.3-201ENST00000603769 301 ntBASIC2.4□□□□□ -2.03
SOX3P41225 RPL23AP88-201ENST00000605759 454 ntBASIC2.4□□□□□ -2.03
SOX3P41225 UCA1.1-201ENST00000620952 75 ntBASIC2.4□□□□□ -2.03
SOX3P41225 RMST_7.1-201ENST00000621935 268 ntBASIC2.4□□□□□ -2.03
SOX3P41225 AC010297.1-201ENST00000623948 149 ntBASIC2.4□□□□□ -2.03
SOX3P41225 Z69720.2-201ENST00000624755 279 ntBASIC2.4□□□□□ -2.03
SOX3P41225 SCARNA4-202ENST00000625402 129 ntBASIC2.4□□□□□ -2.03
SOX3P41225 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.4□□□□□ -2.03
SOX3P41225 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.4□□□□□ -2.03
SOX3P41225 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.39□□□□□ -2.03
SOX3P41225 AC004944.1-201ENST00000517807 3059 ntBASIC2.39□□□□□ -2.03
SOX3P41225 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
SOX3P41225 MIR6073-201ENST00000352083 89 ntBASIC2.39□□□□□ -2.03
SOX3P41225 MIR449A-201ENST00000362113 91 ntBASIC2.39□□□□□ -2.03
SOX3P41225 RNA5SP68-201ENST00000363885 119 ntBASIC2.39□□□□□ -2.03
SOX3P41225 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.39□□□□□ -2.03
SOX3P41225 TOMM20P4-201ENST00000427861 435 ntBASIC2.39□□□□□ -2.03
SOX3P41225 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.39□□□□□ -2.03
SOX3P41225 RBMX2P4-201ENST00000441256 376 ntBASIC2.39□□□□□ -2.03
SOX3P41225 AC087884.1-201ENST00000469738 328 ntBASIC2.39□□□□□ -2.03
SOX3P41225 MTCYBP18-201ENST00000501056 747 ntBASIC2.39□□□□□ -2.03
SOX3P41225 AC114781.4-201ENST00000513707 639 ntBASIC2.39□□□□□ -2.03
SOX3P41225 Y_RNA.687-201ENST00000516558 91 ntBASIC2.39□□□□□ -2.03
SOX3P41225 RNU6-358P-201ENST00000516564 75 ntBASIC2.39□□□□□ -2.03
SOX3P41225 AF235103.2-201ENST00000525753 346 ntBASIC2.39□□□□□ -2.03
SOX3P41225 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.39□□□□□ -2.03
SOX3P41225 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.39□□□□□ -2.03
SOX3P41225 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.39□□□□□ -2.03
SOX3P41225 AC060766.3-201ENST00000591442 263 ntBASIC2.39□□□□□ -2.03
SOX3P41225 AL355877.2-201ENST00000603670 358 ntBASIC2.39□□□□□ -2.03
SOX3P41225 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.39□□□□□ -2.03
SOX3P41225 MIR6817-201ENST00000615588 66 ntBASIC2.39□□□□□ -2.03
SOX3P41225 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.39□□□□□ -2.03
SOX3P41225 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.39□□□□□ -2.03
SOX3P41225 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
SOX3P41225 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.39□□□□□ -2.03
SOX3P41225 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SOX3P41225 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
SOX3P41225 Y_RNA.157-201ENST00000363638 102 ntBASIC2.38□□□□□ -2.03
SOX3P41225 EIF4E2P1-201ENST00000393781 255 ntBASIC2.38□□□□□ -2.03
SOX3P41225 FTH1P15-201ENST00000406984 280 ntBASIC2.38□□□□□ -2.03
SOX3P41225 RNA5SP181-201ENST00000410246 98 ntBASIC2.38□□□□□ -2.03
SOX3P41225 USP9YP20-201ENST00000419224 558 ntBASIC2.38□□□□□ -2.03
SOX3P41225 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.38□□□□□ -2.03
SOX3P41225 Z96811.1-201ENST00000445880 108 ntBASIC2.38□□□□□ -2.03
SOX3P41225 RPS3P1-201ENST00000456781 192 ntBASIC2.38□□□□□ -2.03
SOX3P41225 RPL31P41-201ENST00000477967 372 ntBASIC2.38□□□□□ -2.03
SOX3P41225 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.38□□□□□ -2.03
SOX3P41225 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.38□□□□□ -2.03
SOX3P41225 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.38□□□□□ -2.03
SOX3P41225 Y_RNA.665-201ENST00000516177 98 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms