Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL512605.2-201ENST00000592972 256 ntBASIC3.53□□□□□ -1.84
MSX2P35548 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.53□□□□□ -1.84
MSX2P35548 AC073410.2-201ENST00000603240 332 ntBASIC3.53□□□□□ -1.84
MSX2P35548 AC010900.2-201ENST00000604508 210 ntBASIC3.53□□□□□ -1.84
MSX2P35548 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.53□□□□□ -1.84
MSX2P35548 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.53□□□□□ -1.84
MSX2P35548 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.53□□□□□ -1.84
MSX2P35548 MFSD8-236ENST00000641509 4050 ntBASIC3.53□□□□□ -1.84
MSX2P35548 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.53□□□□□ -1.84
MSX2P35548 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.85
MSX2P35548 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
MSX2P35548 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
MSX2P35548 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.52□□□□□ -1.85
MSX2P35548 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.52□□□□□ -1.85
MSX2P35548 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
MSX2P35548 RNA5SP130-201ENST00000364431 114 ntBASIC3.52□□□□□ -1.85
MSX2P35548 RNA5SP515-201ENST00000364570 118 ntBASIC3.52□□□□□ -1.85
MSX2P35548 MIR215-201ENST00000384858 110 ntBASIC3.52□□□□□ -1.85
MSX2P35548 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
MSX2P35548 SNORA12.2-201ENST00000391040 156 ntBASIC3.52□□□□□ -1.85
MSX2P35548 RPS29P13-201ENST00000402041 169 ntBASIC3.52□□□□□ -1.85
MSX2P35548 MIR548H3-201ENST00000408771 118 ntBASIC3.52□□□□□ -1.85
MSX2P35548 RNU2-14P-201ENST00000411053 191 ntBASIC3.52□□□□□ -1.85
MSX2P35548 AC007919.1-201ENST00000429380 217 ntBASIC3.52□□□□□ -1.85
MSX2P35548 AC004383.1-201ENST00000438135 289 ntBASIC3.52□□□□□ -1.85
MSX2P35548 RN7SKP210-201ENST00000459176 261 ntBASIC3.52□□□□□ -1.85
MSX2P35548 UQCRHP4-201ENST00000471686 272 ntBASIC3.52□□□□□ -1.85
MSX2P35548 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.52□□□□□ -1.85
MSX2P35548 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.52□□□□□ -1.85
MSX2P35548 AL442163.3-201ENST00000554110 156 ntBASIC3.52□□□□□ -1.85
MSX2P35548 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.52□□□□□ -1.85
MSX2P35548 AC104581.2-201ENST00000572227 430 ntBASIC3.52□□□□□ -1.85
MSX2P35548 MIR3138-201ENST00000585238 82 ntBASIC3.52□□□□□ -1.85
MSX2P35548 AC009779.6-201ENST00000603972 165 ntBASIC3.52□□□□□ -1.85
MSX2P35548 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.52□□□□□ -1.85
MSX2P35548 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
MSX2P35548 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.51□□□□□ -1.85
MSX2P35548 AL359693.1-201ENST00000614959 2407 ntBASIC3.51□□□□□ -1.85
MSX2P35548 AC118273.1-201ENST00000525324 3006 ntBASIC3.51□□□□□ -1.85
MSX2P35548 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.51□□□□□ -1.85
MSX2P35548 MIR30E-201ENST00000362104 92 ntBASIC3.51□□□□□ -1.85
MSX2P35548 MIR335-201ENST00000362173 94 ntBASIC3.51□□□□□ -1.85
MSX2P35548 RNU6-227P-201ENST00000362865 103 ntBASIC3.51□□□□□ -1.85
MSX2P35548 snoU2_19.2-201ENST00000363024 80 ntBASIC3.51□□□□□ -1.85
MSX2P35548 SNORD27-201ENST00000363981 72 ntBASIC3.51□□□□□ -1.85
MSX2P35548 RNA5SP42-201ENST00000364278 115 ntBASIC3.51□□□□□ -1.85
MSX2P35548 Y_RNA.358-201ENST00000365491 99 ntBASIC3.51□□□□□ -1.85
MSX2P35548 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.51□□□□□ -1.85
MSX2P35548 Y_RNA.785-201ENST00000384290 109 ntBASIC3.51□□□□□ -1.85
MSX2P35548 SNORD115-46-201ENST00000390982 71 ntBASIC3.51□□□□□ -1.85
MSX2P35548 SNORA48.7-201ENST00000391302 135 ntBASIC3.51□□□□□ -1.85
MSX2P35548 RPL21P75-201ENST00000396599 483 ntBASIC3.51□□□□□ -1.85
MSX2P35548 RPL21P28-201ENST00000401418 483 ntBASIC3.51□□□□□ -1.85
MSX2P35548 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.51□□□□□ -1.85
MSX2P35548 AL590556.1-201ENST00000423231 483 ntBASIC3.51□□□□□ -1.85
MSX2P35548 TOMM20P4-201ENST00000427861 435 ntBASIC3.51□□□□□ -1.85
MSX2P35548 AL356867.1-201ENST00000429623 299 ntBASIC3.51□□□□□ -1.85
MSX2P35548 ARF4P2-201ENST00000430209 526 ntBASIC3.51□□□□□ -1.85
MSX2P35548 MTND5P15-201ENST00000434246 349 ntBASIC3.51□□□□□ -1.85
MSX2P35548 RPL23AP22-201ENST00000437556 453 ntBASIC3.51□□□□□ -1.85
MSX2P35548 NUTF2P3-201ENST00000448540 384 ntBASIC3.51□□□□□ -1.85
MSX2P35548 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.51□□□□□ -1.85
MSX2P35548 AC092798.1-201ENST00000458542 409 ntBASIC3.51□□□□□ -1.85
MSX2P35548 RPL21P39-201ENST00000463605 483 ntBASIC3.51□□□□□ -1.85
MSX2P35548 AC087190.1-201ENST00000484462 480 ntBASIC3.51□□□□□ -1.85
MSX2P35548 AC107032.1-201ENST00000485945 480 ntBASIC3.51□□□□□ -1.85
MSX2P35548 AC132942.1-201ENST00000486753 483 ntBASIC3.51□□□□□ -1.85
MSX2P35548 AC093591.1-201ENST00000491435 481 ntBASIC3.51□□□□□ -1.85
MSX2P35548 RPL21P16-201ENST00000495531 483 ntBASIC3.51□□□□□ -1.85
MSX2P35548 AC110768.1-201ENST00000509222 400 ntBASIC3.51□□□□□ -1.85
MSX2P35548 RNA5SP165-201ENST00000517142 115 ntBASIC3.51□□□□□ -1.85
MSX2P35548 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.51□□□□□ -1.85
MSX2P35548 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
MSX2P35548 MIR5047-201ENST00000579212 100 ntBASIC3.51□□□□□ -1.85
MSX2P35548 IPO5P1-202ENST00000600039 287 ntBASIC3.51□□□□□ -1.85
MSX2P35548 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.51□□□□□ -1.85
MSX2P35548 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.51□□□□□ -1.85
MSX2P35548 U6.92-201ENST00000636464 89 ntBASIC3.51□□□□□ -1.85
MSX2P35548 U4.7-201ENST00000638126 106 ntBASIC3.51□□□□□ -1.85
MSX2P35548 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.5□□□□□ -1.85
MSX2P35548 OTUD4P1-201ENST00000237841 3067 ntBASIC3.5□□□□□ -1.85
MSX2P35548 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
MSX2P35548 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.5□□□□□ -1.85
MSX2P35548 RNA5SP295-201ENST00000362655 121 ntBASIC3.5□□□□□ -1.85
MSX2P35548 Y_RNA.237-201ENST00000364439 102 ntBASIC3.5□□□□□ -1.85
MSX2P35548 RNU6-336P-201ENST00000364891 107 ntBASIC3.5□□□□□ -1.85
MSX2P35548 RNU6-338P-201ENST00000383888 105 ntBASIC3.5□□□□□ -1.85
MSX2P35548 RNU6-741P-201ENST00000383889 107 ntBASIC3.5□□□□□ -1.85
MSX2P35548 Y_RNA.405-201ENST00000383979 100 ntBASIC3.5□□□□□ -1.85
MSX2P35548 Y_RNA.451-201ENST00000384200 100 ntBASIC3.5□□□□□ -1.85
MSX2P35548 Y_RNA.524-201ENST00000384564 100 ntBASIC3.5□□□□□ -1.85
MSX2P35548 Y_RNA.561-201ENST00000384694 100 ntBASIC3.5□□□□□ -1.85
MSX2P35548 SNORD58.1-201ENST00000391313 66 ntBASIC3.5□□□□□ -1.85
MSX2P35548 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
MSX2P35548 MTHFD2P2-201ENST00000407725 247 ntBASIC3.5□□□□□ -1.85
MSX2P35548 AC007560.1-201ENST00000426912 237 ntBASIC3.5□□□□□ -1.85
MSX2P35548 PIGFP3-201ENST00000441918 722 ntBASIC3.5□□□□□ -1.85
MSX2P35548 AL078601.1-201ENST00000444542 271 ntBASIC3.5□□□□□ -1.85
MSX2P35548 AC084357.1-201ENST00000473404 255 ntBASIC3.5□□□□□ -1.85
MSX2P35548 KC877373.1-201ENST00000479066 408 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms