Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC9P31274 MRPS10P2-201ENST00000431226 381 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXC9P31274 AL078601.1-201ENST00000444542 271 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC9P31274 AC092798.1-201ENST00000458542 409 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 MTCO3P38-201ENST00000468910 766 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXC9P31274 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXC9P31274 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXC9P31274 AL138976.2-201ENST00000563989 694 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 RMST_3.1-201ENST00000611651 109 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
HOXC9P31274 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXC9P31274 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 AC024614.3-201ENST00000637860 256 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXC9P31274 MTND5P7-201ENST00000413558 1798 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXC9P31274 RNU6-38P-201ENST00000384085 107 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 RNU6-166P-201ENST00000384371 107 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 RNU6-434P-201ENST00000384376 107 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 SNORA40C-201ENST00000391285 128 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 AL592114.1-201ENST00000403842 483 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXC9P31274 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXC9P31274 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
HOXC9P31274 AL714022.1-201ENST00000439897 151 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 BRK1P2-201ENST00000442875 223 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 PRPS1P1-201ENST00000445305 876 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXC9P31274 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXC9P31274 RNU6-333P-201ENST00000459117 107 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXC9P31274 TBCAP3-201ENST00000512475 312 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 AC104136.1-201ENST00000512969 394 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 RNU6-991P-201ENST00000516168 107 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 RNU6-1183P-201ENST00000517054 60 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 MIR4424-201ENST00000585257 86 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 AC010378.1-201ENST00000619270 362 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 AC004520.1-201ENST00000608362 1413 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 AC091564.4-201ENST00000533934 2194 ntBASIC2.91□□□□□ -1.94
HOXC9P31274 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXC9P31274 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
HOXC9P31274 MIR412-201ENST00000362142 91 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 RNA5SP139-201ENST00000364340 117 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 Y_RNA.231-201ENST00000364358 102 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXC9P31274 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
HOXC9P31274 RNU2-2P-201ENST00000410396 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 RNA5SP344-201ENST00000411081 104 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 NDUFS5P4-201ENST00000412983 318 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXC9P31274 MTND1P2-201ENST00000430604 821 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 FGF7P6-202ENST00000451282 293 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 RPS29P12-201ENST00000460178 152 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 AC092185.1-201ENST00000491371 97 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 AC069439.1-201ENST00000494739 167 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 AC114786.4-201ENST00000508771 728 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXC9P31274 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXC9P31274 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXC9P31274 RNU2-69P-201ENST00000516061 100 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 RNU1-86P-201ENST00000516108 154 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 RNU1-107P-201ENST00000516617 154 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 RN7SKP282-201ENST00000516824 299 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 RNU6-703P-201ENST00000516946 107 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.9□□□□□ -1.95
HOXC9P31274 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXC9P31274 AL118558.2-201ENST00000556294 238 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 AL133241.1-201ENST00000556832 487 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.17-201ENST00000611454 95 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.15-201ENST00000611544 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.16-201ENST00000613119 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.12-201ENST00000613778 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.20-201ENST00000613956 192 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.9-201ENST00000615427 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.11-201ENST00000616345 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.2-201ENST00000616535 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.3-201ENST00000617785 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.19-201ENST00000618602 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 RNU2-1-201ENST00000618664 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.6-201ENST00000619225 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.5-201ENST00000619465 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 U2.10-201ENST00000620268 191 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXC9P31274 AC093536.2-201ENST00000565257 1406 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXC9P31274 FAM35CP-201ENST00000554755 2470 ntBASIC2.9□□□□□ -1.95
HOXC9P31274 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
HOXC9P31274 AL356292.1-201ENST00000283110 373 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 Y_RNA.378-201ENST00000365652 113 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 MIR10A-201ENST00000385043 110 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 RNA5SP219-201ENST00000390940 113 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 RNU2-49P-201ENST00000410666 184 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 Y_RNA.623-201ENST00000411128 95 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXC9P31274 BX682237.1-201ENST00000415016 335 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms