Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC004852.3-201ENST00000614131 326 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 HMGB1P24-202ENST00000615653 685 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 MIR6076-201ENST00000617521 113 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AP003355.3-201ENST00000623465 114 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 TEX41-280ENST00000629185 591 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD3P31249 SNORA50A-202ENST00000629536 136 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD3P31249 AC110774.1-201ENST00000623567 2018 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 ZNF72P-201ENST00000425869 1908 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
HOXD3P31249 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
HOXD3P31249 FAM35BP-202ENST00000497389 3337 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD3P31249 RNY3P11-201ENST00000364153 102 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HOXD3P31249 EI24P2-201ENST00000397776 1076 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD3P31249 AL356057.3-201ENST00000402607 340 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXD3P31249 RPL26P27-201ENST00000414397 437 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 CYCSP4-201ENST00000429682 331 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD3P31249 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD3P31249 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXD3P31249 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD3P31249 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD3P31249 RPS29P27-201ENST00000463711 170 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXD3P31249 SNORA43.2-201ENST00000516652 128 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXD3P31249 AC109479.2-201ENST00000517842 174 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.75□□□□□ -1.97
HOXD3P31249 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXD3P31249 HIGD1AP1-201ENST00000550979 275 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AL391261.3-201ENST00000557194 520 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXD3P31249 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXD3P31249 HMGN2P15-201ENST00000585707 270 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AC092447.9-201ENST00000603395 144 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AC136443.5-201ENST00000603741 370 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AL355598.1-201ENST00000604169 202 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AP001836.1-201ENST00000604675 523 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AC018889.1-201ENST00000605372 397 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AC005046.1-201ENST00000608515 625 ntBASIC2.75□□□□□ -1.97
HOXD3P31249 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD3P31249 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD3P31249 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD3P31249 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD3P31249 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD3P31249 AC007656.2-201ENST00000624902 4547 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HOXD3P31249 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HOXD3P31249 Y_RNA.364-201ENST00000365532 101 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 Y_RNA.428-201ENST00000384078 102 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 Y_RNA.527-201ENST00000384573 102 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 MIR128-1-201ENST00000384921 82 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 MIR634-201ENST00000385208 97 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 SNORA48.2-201ENST00000390926 124 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 Y_RNA.645-201ENST00000391229 102 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 Z98941.1-201ENST00000407764 100 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 DBIP2-201ENST00000419076 262 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 NUP35P1-201ENST00000422734 947 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD3P31249 AC096644.2-201ENST00000429278 159 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXD3P31249 CHEK2P4-201ENST00000450340 246 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD3P31249 AC008155.2-201ENST00000464337 397 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXD3P31249 RPL17P19-201ENST00000489069 552 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 AC021146.2-201ENST00000504736 556 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 SNORA25.10-201ENST00000515926 124 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 SNORD116.3-201ENST00000517176 78 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD3P31249 AC010653.1-201ENST00000571108 881 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD3P31249 MIR3609-201ENST00000582661 80 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 AL133393.1-201ENST00000603277 287 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD3P31249 AC099778.2-201ENST00000610904 211 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
HOXD3P31249 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HOXD3P31249 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXD3P31249 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HOXD3P31249 SRP72P2-201ENST00000344851 1979 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HOXD3P31249 AC091812.1-201ENST00000432235 1948 ntBASIC2.74□□□□□ -1.97
HOXD3P31249 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
HOXD3P31249 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXD3P31249 MIR423-201ENST00000362201 94 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 SNORD50.1-201ENST00000362987 71 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 RNY1P16-201ENST00000363063 111 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 RNU6-527P-201ENST00000363425 104 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 Y_RNA.158-201ENST00000363651 101 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 RNU6-105P-201ENST00000363909 104 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 RNU6-26P-201ENST00000383985 107 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 SNORA1.3-201ENST00000384676 136 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
HOXD3P31249 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXD3P31249 RPS29P13-201ENST00000402041 169 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms