Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC090616.3-201ENST00000582184 217 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC005771.1-201ENST00000585581 349 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AL031775.1-201ENST00000607014 887 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC1.35□□□□□ -2.19
COL5A3P25940 AL161423.1-201ENST00000613700 262 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.35□□□□□ -2.19
COL5A3P25940 AL603755.1-201ENST00000619504 163 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 MTND1P37-201ENST00000636562 264 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
COL5A3P25940 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.34□□□□□ -2.19
COL5A3P25940 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.34□□□□□ -2.19
COL5A3P25940 RNY4P24-201ENST00000362735 96 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 Y_RNA.234-201ENST00000364409 97 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 SNORA68.1-201ENST00000364537 132 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 MIR514A1-201ENST00000385133 98 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 RNU2-62P-201ENST00000410868 191 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.34□□□□□ -2.2
COL5A3P25940 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.34□□□□□ -2.2
COL5A3P25940 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.34□□□□□ -2.2
COL5A3P25940 USP12PX-201ENST00000432383 1057 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 AL360221.1-201ENST00000445989 335 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 AL590365.1-201ENST00000450788 243 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.34□□□□□ -2.2
COL5A3P25940 RNU7-26P-201ENST00000458980 63 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 RNU7-23P-201ENST00000459465 62 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 SNORD42A-201ENST00000459584 64 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.34□□□□□ -2.2
COL5A3P25940 AC010631.1-201ENST00000474150 156 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.34□□□□□ -2.2
COL5A3P25940 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.34□□□□□ -2.2
COL5A3P25940 SCARNA15.2-201ENST00000516409 127 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.34□□□□□ -2.2
COL5A3P25940 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.34□□□□□ -2.2
COL5A3P25940 MRPS36P5-201ENST00000551909 298 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.34□□□□□ -2.2
COL5A3P25940 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.34□□□□□ -2.2
COL5A3P25940 MIR5571-201ENST00000577998 113 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 MIR3167-201ENST00000579623 85 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.34□□□□□ -2.2
COL5A3P25940 AC078899.2-201ENST00000595282 212 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC1.34□□□□□ -2.2
COL5A3P25940 AC068057.2-201ENST00000624047 895 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 AL136313.1-201ENST00000624804 202 ntBASIC1.34□□□□□ -2.2
COL5A3P25940 RNU5F-7P-201ENST00000363696 115 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 RNU6-701P-201ENST00000384059 107 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 RNU6-769P-201ENST00000384407 104 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.33□□□□□ -2.2
COL5A3P25940 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC1.33□□□□□ -2.2
COL5A3P25940 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.33□□□□□ -2.2
COL5A3P25940 AL365203.2-201ENST00000423444 196 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.33□□□□□ -2.2
COL5A3P25940 CYCSP46-201ENST00000423569 204 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.33□□□□□ -2.2
COL5A3P25940 AC005094.1-201ENST00000440420 368 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.33□□□□□ -2.2
COL5A3P25940 GAPDHP17-201ENST00000449858 1001 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.33□□□□□ -2.2
COL5A3P25940 AC138853.1-201ENST00000503549 823 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 MRPS36P2-201ENST00000512569 299 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.33□□□□□ -2.2
COL5A3P25940 OSBPL9P5-201ENST00000542581 171 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC1.33□□□□□ -2.2
COL5A3P25940 AL133153.1-201ENST00000557756 303 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.33□□□□□ -2.2
COL5A3P25940 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.33□□□□□ -2.2
COL5A3P25940 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC1.33□□□□□ -2.2
COL5A3P25940 AC068276.1-201ENST00000605793 379 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 AC103810.8-201ENST00000607347 118 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.33□□□□□ -2.2
COL5A3P25940 AC090970.3-201ENST00000612566 866 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 AP003399.1-201ENST00000637534 361 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 ELL2P3-201ENST00000457883 1602 ntBASIC1.33□□□□□ -2.2
COL5A3P25940 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.33□□□□□ -2.2
COL5A3P25940 SNORD116-1-201ENST00000384335 95 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.32□□□□□ -2.2
COL5A3P25940 AC009518.2-201ENST00000418056 731 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.32□□□□□ -2.2
COL5A3P25940 AC090960.1-201ENST00000421072 306 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC137499.1-201ENST00000427602 88 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 MICF-203ENST00000432679 129 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.32□□□□□ -2.2
COL5A3P25940 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.32□□□□□ -2.2
COL5A3P25940 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.32□□□□□ -2.2
COL5A3P25940 RSU1P2-202ENST00000437884 485 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 RPL22P17-201ENST00000438729 315 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC1.32□□□□□ -2.2
COL5A3P25940 MTATP6P30-201ENST00000443540 664 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.32□□□□□ -2.2
COL5A3P25940 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.32□□□□□ -2.2
COL5A3P25940 AC114786.4-201ENST00000508771 728 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.32□□□□□ -2.2
COL5A3P25940 MTND5P13-201ENST00000513046 1079 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC114797.1-201ENST00000514003 728 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC106038.2-201ENST00000520706 568 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AP003181.2-201ENST00000528941 181 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC090888.1-201ENST00000561335 1141 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC008088.1-201ENST00000580993 280 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.32□□□□□ -2.2
COL5A3P25940 HMGN2P15-201ENST00000585707 270 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms