Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MTND5P7-201ENST00000413558 1798 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.94□□□□□ -1.78
COL6A1P12109 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A1P12109 Y_RNA.512-201ENST00000384518 102 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 SAR1AP2-201ENST00000392696 594 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A1P12109 RN7SKP111-201ENST00000410349 271 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 CYCSP33-201ENST00000414485 327 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.94□□□□□ -1.78
COL6A1P12109 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 RPS15AP10-201ENST00000432472 382 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.94□□□□□ -1.78
COL6A1P12109 AC093852.1-201ENST00000503587 266 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 AC097462.2-201ENST00000504623 481 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 RNU6-1315P-201ENST00000517187 99 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 MIR1273C-201ENST00000578669 77 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 AC002545.1-201ENST00000592511 181 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 AL133393.1-201ENST00000603277 287 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 AC103988.1-201ENST00000566382 2177 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A1P12109 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A1P12109 OR4G2P-202ENST00000641004 1759 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A1P12109 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A1P12109 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A1P12109 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
COL6A1P12109 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A1P12109 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A1P12109 RNY1P16-201ENST00000363063 111 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 RNU6-395P-201ENST00000365662 106 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 MIR625-201ENST00000385047 85 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 RNU2-3P-201ENST00000410144 191 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 RN7SKP284-201ENST00000411002 343 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 RNU6-325P-201ENST00000411132 105 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 AL356535.1-201ENST00000440335 398 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 DYNLT3P2-201ENST00000442517 295 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 RPS24P13-201ENST00000442520 397 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 AC073910.1-201ENST00000445047 438 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.93□□□□□ -1.78
COL6A1P12109 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.93□□□□□ -1.78
COL6A1P12109 AC006483.1-201ENST00000487308 313 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 RNU2-53P-201ENST00000516257 147 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 MIR892C-201ENST00000516410 77 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 RNA5SP291-201ENST00000517222 105 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 AC040926.1-201ENST00000530195 238 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.93□□□□□ -1.78
COL6A1P12109 AL157871.3-201ENST00000557231 293 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.93□□□□□ -1.78
COL6A1P12109 MIR4672-201ENST00000583126 81 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 MIR5188-201ENST00000583467 113 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 HMGB1P24-202ENST00000615653 685 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 RMST_4.1-201ENST00000616886 107 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 U4.6-201ENST00000621618 127 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 MIR4727-201ENST00000622232 55 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.93□□□□□ -1.78
COL6A1P12109 U6.104-201ENST00000637979 90 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A1P12109 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A1P12109 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A1P12109 AC018555.1-201ENST00000567548 1980 ntBASIC3.93□□□□□ -1.78
COL6A1P12109 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A1P12109 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A1P12109 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
COL6A1P12109 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.92□□□□□ -1.78
COL6A1P12109 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.78
COL6A1P12109 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A1P12109 Y_RNA.276-201ENST00000364732 109 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 RNU4-42P-201ENST00000364738 142 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 SNORA14A-201ENST00000364773 135 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 Y_RNA.396-201ENST00000383949 103 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 RNU6-1027P-201ENST00000383998 107 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 Y_RNA.552-201ENST00000384665 112 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 MIR514A1-201ENST00000385133 98 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 AL513475.1-201ENST00000406602 315 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.92□□□□□ -1.78
COL6A1P12109 MTCO3P8-201ENST00000453691 755 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 RNU6-1037P-201ENST00000459571 107 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.92□□□□□ -1.78
COL6A1P12109 SUMO2P6-201ENST00000505273 288 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 AC107222.1-201ENST00000510899 637 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 AC113155.1-201ENST00000511141 769 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 RNU6-408P-201ENST00000515910 100 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 RN7SKP209-201ENST00000516888 304 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 AC144568.1-201ENST00000520139 137 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.92□□□□□ -1.78
COL6A1P12109 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.92□□□□□ -1.78
COL6A1P12109 AL033523.1-201ENST00000605153 153 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 HMGB1P50-201ENST00000605814 607 ntBASIC3.92□□□□□ -1.78
COL6A1P12109 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.92□□□□□ -1.78
COL6A1P12109 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A1P12109 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A1P12109 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.91□□□□□ -1.78
COL6A1P12109 Y_RNA.33-201ENST00000362591 102 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 RNU6-512P-201ENST00000364438 103 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 Y_RNA.447-201ENST00000384184 113 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 Y_RNA.461-201ENST00000384263 103 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
COL6A1P12109 PGBD4P6-201ENST00000421501 610 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.91□□□□□ -1.78
COL6A1P12109 RPL21P2-201ENST00000440049 481 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms