Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 RNU6-1054P-201ENST00000411293 104 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 RNA5SP269-201ENST00000459032 137 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 CENPUP1-201ENST00000526649 1202 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 AC233702.2-202ENST00000562547 291 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AC090079.2-201ENST00000575289 768 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 MIR548AX-201ENST00000580117 73 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.16□□□□□ -2.38
SPTA1P02549 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 AC105129.3-201ENST00000605455 485 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AL022345.2-201ENST00000606307 135 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AC004908.3-201ENST00000610248 625 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 U4atac.1-201ENST00000618345 95 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AC090772.4-201ENST00000623599 362 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.16□□□□□ -2.38
SPTA1P02549 SNORD118-201ENST00000363593 134 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 RNU6-968P-201ENST00000384076 107 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 RNU6-921P-201ENST00000384361 107 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 MIR10B-201ENST00000385011 110 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 MIR938-201ENST00000401216 83 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 MIR1262-201ENST00000408276 93 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 MTCYBP32-201ENST00000427945 1084 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 FO393419.3-201ENST00000428741 282 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 AC132479.1-201ENST00000449160 144 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 LSM6P2-201ENST00000552208 177 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AL136520.1-202ENST00000555494 763 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 AL022067.1-201ENST00000602426 454 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AP000811.1-201ENST00000603803 651 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AL161729.4-201ENST00000604650 476 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.16□□□□□ -2.38
SPTA1P02549 AC093913.1-201ENST00000614178 329 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 U1.36-201ENST00000620684 176 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 AC106858.1-201ENST00000637497 429 ntBASIC0.16□□□□□ -2.38
SPTA1P02549 RNU6-452P-201ENST00000384406 107 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 MIR649-201ENST00000384843 97 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AC099677.2-201ENST00000436385 175 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AL135790.2-201ENST00000437701 267 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 RPL21P47-201ENST00000483696 477 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AP003034.1-201ENST00000534621 422 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.15□□□□□ -2.39
SPTA1P02549 Z83818.1-201ENST00000603584 150 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AC069304.2-201ENST00000605154 435 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AC011374.2-201ENST00000607135 526 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AL109620.1-201ENST00000618738 1197 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AP003400.6-201ENST00000624698 740 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AC100810.6-201ENST00000638068 285 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC0.15□□□□□ -2.39
SPTA1P02549 MTCO1P18-201ENST00000455518 1419 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.15□□□□□ -2.39
SPTA1P02549 AC092634.6-201ENST00000418558 192 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AC119618.1-201ENST00000434191 222 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 SNRPEP9-201ENST00000436794 238 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.15□□□□□ -2.39
SPTA1P02549 SCARNA15.2-201ENST00000516409 127 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 RNU6-165P-201ENST00000517170 99 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 RNU6-889P-201ENST00000517189 103 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AL590705.4-201ENST00000532209 134 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.15□□□□□ -2.39
SPTA1P02549 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 HMGB1P51-201ENST00000605166 638 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 AC138627.2-201ENST00000624202 601 ntBASIC0.15□□□□□ -2.39
SPTA1P02549 RNA5SP493-201ENST00000364115 91 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 RNU6-1327P-201ENST00000365302 105 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 RNU6-741P-201ENST00000383889 107 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 RNU6-1151P-201ENST00000384684 107 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.14□□□□□ -2.39
SPTA1P02549 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.14□□□□□ -2.39
SPTA1P02549 AC069257.2-201ENST00000441819 155 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AC010460.2-201ENST00000509054 677 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AC022616.2-201ENST00000523185 300 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC0.14□□□□□ -2.39
SPTA1P02549 AC141557.1-201ENST00000540982 400 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AC027104.1-201ENST00000563702 681 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AP005212.4-201ENST00000614206 710 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AL590240.4-201ENST00000616908 390 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 SNORD114-3-201ENST00000364969 75 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 RNU6-302P-201ENST00000365249 107 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 SNORD99-201ENST00000408612 74 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 RNU2-48P-201ENST00000410694 191 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 USP9YP19-201ENST00000412165 485 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 RPL26P27-201ENST00000414397 437 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 USP9YP13-201ENST00000417797 480 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 FABP5P14-201ENST00000437273 393 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.14□□□□□ -2.39
SPTA1P02549 AC004865.1-201ENST00000442276 1003 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.14□□□□□ -2.39
SPTA1P02549 snoU13.21-201ENST00000459368 105 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.14□□□□□ -2.39
SPTA1P02549 AC068790.6-201ENST00000602558 258 ntBASIC0.14□□□□□ -2.39
SPTA1P02549 AC004067.1-201ENST00000608733 700 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms