Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.86□□□□□ -2.11
CLDN9O95484 RAP1BP2-201ENST00000478270 544 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 HMGB1P35-201ENST00000503360 598 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.86□□□□□ -2.11
CLDN9O95484 FABP5P5-201ENST00000515537 406 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 RNA5SP364-201ENST00000516938 78 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.86□□□□□ -2.11
CLDN9O95484 AC008015.1-201ENST00000555505 465 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.86□□□□□ -2.11
CLDN9O95484 WISP1-OT1-201ENST00000602893 642 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 SNRPGP19-201ENST00000603826 189 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 AL670379.2-201ENST00000604983 252 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 AC092354.1-201ENST00000606057 376 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 AL121992.2-201ENST00000606262 256 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC1.86□□□□□ -2.11
CLDN9O95484 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 AC098657.3-201ENST00000620434 263 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.86□□□□□ -2.11
CLDN9O95484 AL359740.1-201ENST00000624340 592 ntBASIC1.86□□□□□ -2.11
CLDN9O95484 ZNF355P-201ENST00000427301 3216 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 RNA5SP276-201ENST00000362580 94 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 RNU6-212P-201ENST00000362642 104 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 RNU6-1159P-201ENST00000362933 107 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 RNU6-179P-201ENST00000363350 107 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 RNU6-622P-201ENST00000384272 103 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 GSTA9P-201ENST00000406231 611 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.85□□□□□ -2.11
CLDN9O95484 RPL21P90-201ENST00000415692 466 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 Z99497.1-201ENST00000421282 135 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.85□□□□□ -2.11
CLDN9O95484 MTND5P25-201ENST00000430499 799 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 NDUFA5P4-201ENST00000436704 385 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 HMGB1P31-201ENST00000437242 427 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 RPL23AP42-201ENST00000471152 471 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 BZW1P2-201ENST00000473537 826 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.85□□□□□ -2.11
CLDN9O95484 AP001025.1-201ENST00000486139 332 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.85□□□□□ -2.11
CLDN9O95484 RNU6-1053P-201ENST00000515930 101 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 SCARNA24.1-201ENST00000516465 137 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 RNU2-46P-201ENST00000517038 113 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 RNU6-232P-201ENST00000517144 64 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 RNU6-667P-201ENST00000517186 102 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 SNORA31.23-201ENST00000517219 133 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 HSPE1P18-201ENST00000517602 280 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AC109329.1-201ENST00000518744 317 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.85□□□□□ -2.11
CLDN9O95484 AC026271.5-201ENST00000577873 130 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AC012065.4-201ENST00000602445 679 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AC093424.1-201ENST00000604999 338 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AC091304.9-201ENST00000612091 226 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AL133173.2-201ENST00000614270 90 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AC009159.2-201ENST00000617603 606 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 AF246928.1-201ENST00000623768 87 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.85□□□□□ -2.11
CLDN9O95484 AC110994.2-201ENST00000635481 492 ntBASIC1.85□□□□□ -2.11
CLDN9O95484 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.85□□□□□ -2.11
CLDN9O95484 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.85□□□□□ -2.11
CLDN9O95484 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CLDN9O95484 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
CLDN9O95484 AC092881.1-201ENST00000638218 2733 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 SNORD114-1-201ENST00000362705 72 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 RNU6-655P-201ENST00000362858 107 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 RNU6-1274P-201ENST00000384557 107 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 SNORA46.1-201ENST00000391069 153 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 RNU2-20P-201ENST00000410425 191 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.84□□□□□ -2.11
CLDN9O95484 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.84□□□□□ -2.11
CLDN9O95484 AC006026.2-201ENST00000457376 180 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.84□□□□□ -2.11
CLDN9O95484 RN7SKP287-201ENST00000516546 266 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 SNORA43.2-201ENST00000516652 128 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 RNU6-759P-201ENST00000516740 103 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.84□□□□□ -2.11
CLDN9O95484 AC106038.2-201ENST00000520706 568 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.84□□□□□ -2.11
CLDN9O95484 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.84□□□□□ -2.11
CLDN9O95484 AC090897.2-201ENST00000581715 130 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 AL162373.1-201ENST00000620433 407 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 SDR42E1P4-201ENST00000620894 481 ntBASIC1.84□□□□□ -2.11
CLDN9O95484 MTND4P4-201ENST00000439033 1366 ntBASIC1.84□□□□□ -2.12
CLDN9O95484 ZNF702P-202ENST00000434269 1966 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 WWP1P1-201ENST00000466609 2769 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 RNU6-529P-201ENST00000363383 104 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 Y_RNA.140-201ENST00000363474 103 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 RNY4P34-201ENST00000364779 95 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 RNA5SP489-201ENST00000410986 109 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 MTATP6P16-201ENST00000434543 526 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 MTND6P13-201ENST00000443510 523 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 SNRPGP9-201ENST00000456025 225 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 PMCHL2-203ENST00000457791 237 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.83□□□□□ -2.12
CLDN9O95484 AL121594.1-201ENST00000475906 575 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 RPL38P4-201ENST00000502376 214 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 AC116562.3-201ENST00000506136 177 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 RNU1-86P-201ENST00000516108 154 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 RNU1-107P-201ENST00000516617 154 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 Vault.3-201ENST00000516676 95 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 AC068587.5-201ENST00000528506 175 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 AP000763.2-201ENST00000540641 163 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms