| BACE2 | Q9Y5Z0 | ITCH-202 | ENST00000374864 | 6401 nt | APPRIS P1 TSL 1 (best) BASIC | 3.95 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | CALCRL-203 | ENST00000410068 | 1984 nt | APPRIS P1 TSL 2 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | BRCA2-201 | ENST00000380152 | 11986 nt | APPRIS P1 TSL 5 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | MUC15-201 | ENST00000281268 | 2968 nt | TSL 5 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC019117.3-201 | ENST00000637807 | 3523 nt | APPRIS P1 TSL 5 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | CNOT10-206 | ENST00000454516 | 2760 nt | TSL 2 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | OSBPL8-202 | ENST00000393249 | 7047 nt | APPRIS ALT1 TSL 1 (best) BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RAD17-208 | ENST00000380774 | 2117 nt | APPRIS P1 TSL 1 (best) BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | GABRG2-222 | ENST00000639975 | 3662 nt | TSL 5 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | UTRN-204 | ENST00000367545 | 12339 nt | APPRIS P1 TSL 5 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNA5SP387-201 | ENST00000364226 | 106 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU6-898P-201 | ENST00000365627 | 104 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.405-201 | ENST00000383979 | 100 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.451-201 | ENST00000384200 | 100 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.524-201 | ENST00000384564 | 100 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.561-201 | ENST00000384694 | 100 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | MIR34B-201 | ENST00000385076 | 84 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | SNORA11.1-201 | ENST00000408133 | 129 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNA5SP129-201 | ENST00000410276 | 118 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AP000275.1-201 | ENST00000411943 | 390 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | CYCSP4-201 | ENST00000429682 | 331 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC010975.1-201 | ENST00000443301 | 669 nt | TSL 3 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC124916.1-201 | ENST00000444020 | 547 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | MTATP6P7-201 | ENST00000453315 | 681 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RN7SL293P-201 | ENST00000481765 | 281 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RPL23AP49-201 | ENST00000492925 | 468 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.680-201 | ENST00000516441 | 93 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | SNORA43.2-201 | ENST00000516652 | 128 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNA5SP309-201 | ENST00000516670 | 106 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RN7SKP289-201 | ENST00000517244 | 295 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AP006287.2-201 | ENST00000529036 | 502 nt | TSL 2 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AP001458.1-201 | ENST00000532626 | 92 nt | TSL 3 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC021979.1-201 | ENST00000553822 | 336 nt | TSL 3 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | LINC00933-203 | ENST00000559812 | 219 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC104581.2-201 | ENST00000572227 | 430 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | MIR3922-201 | ENST00000585192 | 84 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC004825.2-201 | ENST00000616634 | 455 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC097372.5-201 | ENST00000623665 | 376 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RMDN2-AS1-204 | ENST00000626669 | 448 nt | TSL 5 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | U2.21-201 | ENST00000637295 | 81 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | U6.105-201 | ENST00000637379 | 88 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | NR3C1-202 | ENST00000343796 | 7286 nt | APPRIS P3 TSL 5 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | ZGRF1-212 | ENST00000612287 | 2176 nt | TSL 1 (best) BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Z75746.1-201 | ENST00000440243 | 2080 nt | BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | LLPH-201 | ENST00000266604 | 7746 nt | APPRIS P1 TSL 1 (best) BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | DMD-230 | ENST00000620040 | 13746 nt | APPRIS ALT2 TSL 5 BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | PTP4A1-205 | ENST00000626021 | 2203 nt | APPRIS P1 TSL 1 (best) BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | PREPL-206 | ENST00000409936 | 5212 nt | APPRIS P1 TSL 1 (best) BASIC | 3.94 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | CUL3-203 | ENST00000409096 | 2701 nt | TSL 1 (best) BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | LRFN5-204 | ENST00000554171 | 4253 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | ZNF107-203 | ENST00000395391 | 6094 nt | TSL 1 (best) BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | GLCE-202 | ENST00000559420 | 4840 nt | TSL 1 (best) BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | PLCL1-203 | ENST00000437704 | 5979 nt | TSL 1 (best) BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU6-778P-201 | ENST00000363269 | 103 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU6-527P-201 | ENST00000363425 | 104 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU6-1026P-201 | ENST00000384465 | 108 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | MIR218-2-201 | ENST00000385006 | 110 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU2-37P-201 | ENST00000410695 | 177 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RPL26P27-201 | ENST00000414397 | 437 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | HMGN2P30-201 | ENST00000423237 | 256 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU7-87P-201 | ENST00000459343 | 62 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | LINC02046-202 | ENST00000481334 | 390 nt | TSL 3 BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RPS4XP13-201 | ENST00000483219 | 789 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNA5SP208-201 | ENST00000516156 | 78 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.706-201 | ENST00000516933 | 99 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC087341.1-201 | ENST00000521490 | 491 nt | TSL 2 BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AP003733.2-201 | ENST00000529409 | 171 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC107016.1-201 | ENST00000550463 | 337 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | IGKV2OR2-8-201 | ENST00000558710 | 300 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC060766.3-201 | ENST00000591442 | 263 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RPL23AP78-201 | ENST00000599928 | 470 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC005696.2-201 | ENST00000610120 | 626 nt | TSL 3 BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AL109837.2-201 | ENST00000632608 | 295 nt | TSL 3 BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC091534.1-201 | ENST00000548779 | 1751 nt | TSL 2 BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | TLK1-206 | ENST00000434911 | 2156 nt | TSL 2 BASIC | 3.93 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | SOS1-202 | ENST00000402219 | 8314 nt | APPRIS P2 TSL 1 (best) BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AL672296.1-201 | ENST00000427780 | 2158 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | KCNT2-206 | ENST00000609185 | 3622 nt | TSL 1 (best) BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.14-201 | ENST00000362415 | 103 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.27-201 | ENST00000362540 | 103 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | U3.13-201 | ENST00000364804 | 214 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.358-201 | ENST00000365491 | 99 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU6-611P-201 | ENST00000384276 | 104 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | MIR518D-201 | ENST00000385014 | 87 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | HLFP1-201 | ENST00000402375 | 499 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | HSPE1P26-201 | ENST00000405341 | 275 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU6-130P-201 | ENST00000411112 | 103 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AL445259.1-203 | ENST00000427828 | 251 nt | TSL 3 BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | TAB3-AS1-201 | ENST00000428263 | 245 nt | TSL 5 BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AL355303.1-201 | ENST00000428920 | 680 nt | TSL 3 BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RPL37P4-201 | ENST00000448908 | 268 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC006026.2-201 | ENST00000457376 | 180 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | LINC01399-202 | ENST00000458450 | 244 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU7-175P-201 | ENST00000515915 | 61 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | RNU6-570P-201 | ENST00000517051 | 105 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AP005436.2-201 | ENST00000528458 | 252 nt | TSL 5 BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC007619.1-201 | ENST00000544086 | 412 nt | TSL 5 BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC011824.2-201 | ENST00000579896 | 579 nt | TSL 4 BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC087749.1-202 | ENST00000585020 | 566 nt | TSL 2 BASIC | 3.92 | □□□□□ -1.78 | | |
| BACE2 | Q9Y5Z0 | AC024153.1-201 | ENST00000603103 | 365 nt | BASIC | 3.92 | □□□□□ -1.78 | | |