Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNU6-1287P-201ENST00000362914 107 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 SNORD14B-201ENST00000364533 90 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 RNA5SP125-201ENST00000364843 120 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 Y_RNA.359-201ENST00000365498 102 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 SNORA6-201ENST00000384033 151 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 RNU6-1060P-201ENST00000384664 107 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 MIR454-201ENST00000390180 115 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 RNU6-387P-201ENST00000411331 105 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 OR6C66P-201ENST00000414917 930 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 CYCSP48-201ENST00000417124 323 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC097463.2-201ENST00000421074 142 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AL360221.1-201ENST00000445989 335 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC104058.1-201ENST00000448028 297 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 RPS29P15-201ENST00000458329 171 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC006512.1-201ENST00000468816 291 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AL356057.1-201ENST00000533798 831 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AP005136.1-201ENST00000579765 429 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC105245.1-201ENST00000581934 244 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AL670379.10-201ENST00000604330 253 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AL670379.9-201ENST00000605428 253 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 RN7SKP299-201ENST00000606679 301 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 SNORD116-9-201ENST00000384000 95 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 SNORD116-3-201ENST00000384287 95 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 SNORD116-7-201ENST00000384404 95 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 SNORD116-5-201ENST00000384462 95 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC132479.1-201ENST00000449160 144 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 RNU7-182P-201ENST00000459009 62 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC112771.1-201ENST00000463581 102 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 DYNLL1P5-201ENST00000467158 270 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 SMURF2P1-201ENST00000514992 481 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 RNU1-86P-201ENST00000516108 154 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 SNORD27.1-201ENST00000516319 72 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 RNU1-107P-201ENST00000516617 154 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 RSL24D1P11-201ENST00000591045 491 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC002984.1-201ENST00000591692 448 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AL138889.2-201ENST00000603883 242 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC136475.10-201ENST00000620253 385 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC092656.1-203ENST00000624134 423 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC138627.2-201ENST00000624202 601 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC009161.2-201ENST00000624626 138 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 AC090582.1-201ENST00000636321 199 ntBASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
VPS54Q9P1Q0 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 RNU6-942P-201ENST00000363002 107 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 SNORD116-2-201ENST00000384274 95 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 RNU6-72P-201ENST00000384285 79 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 SNORD116-1-201ENST00000384335 95 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 SNORD116-6-201ENST00000384711 96 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 RNU6-550P-201ENST00000391057 101 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 RNU2-9P-201ENST00000410194 145 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 MTND1P23-201ENST00000416931 372 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 MORF4L1P6-201ENST00000418771 268 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 RPS3AP44-201ENST00000425466 790 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 MTCO2P11-201ENST00000431069 680 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 NDUFB1P2-201ENST00000449477 176 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 RPL31P3-201ENST00000458430 332 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 MTAPP1-201ENST00000489154 819 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC090255.1-201ENST00000495779 349 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 MTND3P25-201ENST00000509243 135 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 139.4 ms