Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 RNU6-1328P-201ENST00000410938 106 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 OR6C66P-201ENST00000414917 930 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AC096649.2-201ENST00000416186 393 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 MTND1P18-201ENST00000448191 573 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 RNU7-182P-201ENST00000459009 62 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 UBL5P3-201ENST00000475112 231 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 MRPL42P6-201ENST00000486397 371 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 MTCO3P9-201ENST00000506989 781 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 SCARNA17.1-201ENST00000516211 143 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 SCARNA17.2-201ENST00000516334 143 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 SCARNA17.4-201ENST00000614296 143 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 MIR3199-2-201ENST00000636243 86 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 ZNF680P1-201ENST00000436625 1469 ntBASIC2.31□□□□□ -2.04
RNF41Q9H4P4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
RNF41Q9H4P4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
RNF41Q9H4P4 RNU6-461P-201ENST00000364195 107 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 RNU6-384P-201ENST00000364900 104 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 RNU6-1029P-201ENST00000384109 107 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 RNU5A-6P-201ENST00000384136 116 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 Y_RNA.559-201ENST00000384686 107 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AC068050.1-201ENST00000394891 380 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AL451074.3-201ENST00000437709 472 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AL078601.1-201ENST00000444542 271 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AL031659.1-201ENST00000447075 539 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 NDUFB1P2-201ENST00000449477 176 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AC022364.2-201ENST00000457963 554 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 snoU13.15-201ENST00000459407 104 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 RPS3AP17-201ENST00000472594 777 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.3□□□□□ -2.04
RNF41Q9H4P4 RNU6-581P-201ENST00000516214 105 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AL670379.4-201ENST00000605279 254 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AC017083.3-201ENST00000609955 700 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AC005609.4-201ENST00000625071 447 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.3□□□□□ -2.04
RNF41Q9H4P4 SEPT14P19-203ENST00000633205 211 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
RNF41Q9H4P4 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.3□□□□□ -2.04
RNF41Q9H4P4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
RNF41Q9H4P4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 Y_RNA.41-201ENST00000362646 102 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 SNORA51.11-201ENST00000384442 131 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 MIR1261-201ENST00000408659 82 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 RNU2-9P-201ENST00000410194 145 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 Y_RNA.623-201ENST00000411128 95 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 USP9YP6-201ENST00000413550 854 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AL589823.1-201ENST00000429577 183 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AL596276.1-201ENST00000434465 418 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AL161651.1-201ENST00000440882 223 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AC104058.1-201ENST00000448028 297 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AL583843.1-201ENST00000456070 346 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AL356010.1-201ENST00000456364 102 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 RPS29P15-201ENST00000458329 171 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 EIF4EP3-201ENST00000498782 656 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 SNORA31.6-201ENST00000516241 130 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 SNORD19.2-201ENST00000516978 73 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AP003392.2-201ENST00000527269 208 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AC025678.1-201ENST00000567861 338 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AC007151.1-201ENST00000572774 483 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 MTCYBP33-201ENST00000575007 1130 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 MIR4782-201ENST00000577987 79 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 MIR548AC-201ENST00000585049 88 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AC008752.3-201ENST00000588113 712 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AL355877.2-201ENST00000603670 358 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 MIR6840-201ENST00000611937 71 ntBASIC2.29□□□□□ -2.04
RNF41Q9H4P4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.29□□□□□ -2.04
RNF41Q9H4P4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.28□□□□□ -2.04
RNF41Q9H4P4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RNF41Q9H4P4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RNF41Q9H4P4 RNU6-898P-201ENST00000365627 104 ntBASIC2.28□□□□□ -2.04
RNF41Q9H4P4 RNU6-1158P-201ENST00000391167 107 ntBASIC2.28□□□□□ -2.04
RNF41Q9H4P4 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.28□□□□□ -2.04
RNF41Q9H4P4 AC007560.1-201ENST00000426912 237 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms