Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.53□□□□□ -2
CCDC3Q9BQI4 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.53□□□□□ -2
CCDC3Q9BQI4 RNU6-333P-201ENST00000459117 107 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 MTCO3P38-201ENST00000468910 766 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 FAM92A1P2-202ENST00000504766 877 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.53□□□□□ -2
CCDC3Q9BQI4 AC116655.1-201ENST00000508324 901 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.53□□□□□ -2
CCDC3Q9BQI4 RNA5SP282-201ENST00000516355 108 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 OR11H5P-201ENST00000554039 926 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 AC092794.1-201ENST00000612734 582 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 AL031601.2-202ENST00000622650 282 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2.01
CCDC3Q9BQI4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 RNU1-100P-201ENST00000365255 165 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 Y_RNA.381-201ENST00000365666 102 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 SNORA70B-201ENST00000384210 135 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 RNU6-748P-201ENST00000384648 107 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 MIR10A-201ENST00000385043 110 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 RNU2-49P-201ENST00000410666 184 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 BX682237.1-201ENST00000415016 335 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 RPLP0P7-201ENST00000416050 667 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AC009963.1-201ENST00000417265 157 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 SRIP2-201ENST00000428470 166 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 PRPS1P1-201ENST00000445305 876 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 RPL39P40-201ENST00000445481 146 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AC006026.2-201ENST00000457376 180 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AC107626.1-201ENST00000471084 183 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 SRIP1-201ENST00000489235 288 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 RNA5SP401-201ENST00000515920 127 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AP004607.1-201ENST00000524456 203 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 CYCSP27-201ENST00000527643 293 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AC090115.3-201ENST00000553218 849 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 SNORD53-201ENST00000579969 78 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AC146944.4-201ENST00000602697 718 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 RNU6-91P-201ENST00000607774 107 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 UCA1.1-201ENST00000620952 75 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AC064859.1-201ENST00000624741 174 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 AP003400.5-201ENST00000624827 617 ntBASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC3Q9BQI4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 HAUS6P2-201ENST00000433254 2404 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AC121333.1-201ENST00000567488 2709 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 RNU6-451P-201ENST00000362921 107 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 RNU6-942P-201ENST00000363002 107 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 SNORA68.1-201ENST00000364537 132 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 RNU6-1180P-201ENST00000364935 107 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 RNU6-898P-201ENST00000365627 104 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AL513475.1-201ENST00000406602 315 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 Y_RNA.619-201ENST00000410951 90 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AC009296.1-201ENST00000443146 155 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 HIGD1AP2-201ENST00000446367 280 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AL513124.1-201ENST00000450410 614 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 CCDC34P1-201ENST00000507441 517 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 RNA5SP24-201ENST00000516478 95 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 SNORA25.17-201ENST00000517184 124 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 CENPUP1-201ENST00000526649 1202 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 CR383656.8-201ENST00000549046 145 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AL121821.2-201ENST00000556081 394 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AC005261.5-201ENST00000596280 355 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AL355877.2-201ENST00000603670 358 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 Z82243.1-201ENST00000609432 473 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 U2.17-201ENST00000611454 95 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AC107871.2-201ENST00000612894 502 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 uc_338.14-201ENST00000613162 166 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AC103705.1-201ENST00000619013 241 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AC010378.1-201ENST00000619270 362 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 RMST_7.1-201ENST00000621935 268 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 Z69720.2-201ENST00000624755 279 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 CTSLP2-204ENST00000629029 392 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 MIR3688-2-201ENST00000636963 87 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 AC026241.1-201ENST00000517873 2142 ntBASIC2.51□□□□□ -2.01
CCDC3Q9BQI4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AC010329.5-201ENST00000623497 2174 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 Y_RNA.324-201ENST00000365165 102 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 RNU6-1280P-201ENST00000365211 107 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 MIR627-201ENST00000384979 97 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 RNA5SP118-201ENST00000410385 109 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 PTGES3P4-201ENST00000426243 356 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms