Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CENPUP1-201ENST00000526649 1202 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 TRAV32-201ENST00000553993 340 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.26□□□□□ -2.37
USF3Q68DE3 AC138627.2-201ENST00000624202 601 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 FARSBP1-201ENST00000435808 1778 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 RNU6-115P-201ENST00000364310 107 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AC007435.1-201ENST00000421086 415 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 EIF1P1-201ENST00000421436 341 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC0.25□□□□□ -2.37
USF3Q68DE3 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.25□□□□□ -2.37
USF3Q68DE3 RPL21P47-201ENST00000483696 477 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AL163195.1-201ENST00000496941 348 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AP003327.1-201ENST00000529684 127 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AL512310.8-201ENST00000550183 120 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 MIR5589-201ENST00000579442 60 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AC105129.3-201ENST00000605455 485 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 SEC63P2-201ENST00000503863 1939 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
USF3Q68DE3 RNU6-529P-201ENST00000363383 104 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 U3.8-201ENST00000363675 217 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.25□□□□□ -2.37
USF3Q68DE3 AC119751.3-201ENST00000399720 670 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 RNU2-64P-201ENST00000411315 191 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.25□□□□□ -2.37
USF3Q68DE3 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.25□□□□□ -2.37
USF3Q68DE3 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.25□□□□□ -2.37
USF3Q68DE3 MTND3P4-201ENST00000453537 303 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.25□□□□□ -2.37
USF3Q68DE3 AC018868.1-201ENST00000491307 315 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AC145146.1-201ENST00000496370 254 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AC074344.1-201ENST00000512823 224 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 ARL2BPP5-201ENST00000523141 481 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AC136619.2-201ENST00000563361 631 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 AL022345.2-201ENST00000606307 135 ntBASIC0.25□□□□□ -2.37
USF3Q68DE3 RNU6-1078P-201ENST00000364522 103 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC0.24□□□□□ -2.37
USF3Q68DE3 SNORA50A-201ENST00000384225 134 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 RNU6-160P-201ENST00000384591 107 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 MIR10B-201ENST00000385011 110 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 AC069282.1-201ENST00000411911 526 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.24□□□□□ -2.37
USF3Q68DE3 SNORD124-201ENST00000459577 104 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.24□□□□□ -2.37
USF3Q68DE3 AC025465.3-201ENST00000510570 311 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.24□□□□□ -2.37
USF3Q68DE3 AC090142.3-201ENST00000519012 385 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.24□□□□□ -2.37
USF3Q68DE3 AC005951.2-201ENST00000576282 495 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 MIR4667-201ENST00000578933 66 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 BPTFP1-201ENST00000579209 492 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 AL109620.1-201ENST00000618738 1197 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.24□□□□□ -2.37
USF3Q68DE3 AC119674.1-220ENST00000641502 1048 ntBASIC0.24□□□□□ -2.37
USF3Q68DE3 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.24□□□□□ -2.37
USF3Q68DE3 RNU6-543P-201ENST00000362576 108 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AC092634.2-201ENST00000428146 1010 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AC027119.1-201ENST00000440877 241 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 snoU13.9-201ENST00000458927 103 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC0.23□□□□□ -2.37
USF3Q68DE3 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC0.23□□□□□ -2.37
USF3Q68DE3 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.23□□□□□ -2.37
USF3Q68DE3 AL139344.1-201ENST00000605228 195 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AL627230.5-201ENST00000619807 58 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.23□□□□□ -2.37
USF3Q68DE3 AL138713.1-201ENST00000624026 2130 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 DBF4P1-201ENST00000412976 1892 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 OR5T3-201ENST00000303059 1023 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 SNORD18A-201ENST00000363753 72 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 Y_RNA.303-201ENST00000364998 94 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 Y_RNA.476-201ENST00000384347 108 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 RNU6-360P-201ENST00000390944 104 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AC005345.1-201ENST00000431868 217 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AL441985.1-201ENST00000457727 251 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 HMGN1P10-201ENST00000474557 553 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.23□□□□□ -2.37
USF3Q68DE3 RNU4-77P-201ENST00000516692 156 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.23□□□□□ -2.37
USF3Q68DE3 AP003392.2-201ENST00000527269 208 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AC079598.5-201ENST00000547460 117 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.23□□□□□ -2.37
USF3Q68DE3 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC0.23□□□□□ -2.37
USF3Q68DE3 AC006213.5-201ENST00000619673 288 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.23□□□□□ -2.37
USF3Q68DE3 AC017037.3-201ENST00000625016 472 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 LINC02555-201ENST00000563933 1951 ntBASIC0.23□□□□□ -2.37
USF3Q68DE3 AC100821.1-201ENST00000523153 2479 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
USF3Q68DE3 RNU6-778P-201ENST00000363269 103 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 RNU6-105P-201ENST00000363909 104 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 MIR525-201ENST00000384978 85 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.22□□□□□ -2.37
USF3Q68DE3 PPP1R11P2-201ENST00000423543 382 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.22□□□□□ -2.37
USF3Q68DE3 RNA5SP269-201ENST00000459032 137 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 RPL7P43-201ENST00000478876 753 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.22□□□□□ -2.37
USF3Q68DE3 AC087897.1-201ENST00000550134 156 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 MIR3167-201ENST00000579623 85 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms