Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL353621.1-201ENST00000418219 243 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.53□□□□□ -2
PDLIM3Q53GG5 AL627311.1-201ENST00000431514 115 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 ERLEC1P1-201ENST00000433806 578 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AC098831.1-201ENST00000440661 216 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.53□□□□□ -2
PDLIM3Q53GG5 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.53□□□□□ -2
PDLIM3Q53GG5 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.53□□□□□ -2
PDLIM3Q53GG5 MTCYBP18-201ENST00000501056 747 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU1-41P-201ENST00000516161 162 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU1-48P-201ENST00000516400 162 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 Y_RNA.687-201ENST00000516558 91 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 CENPUP1-201ENST00000526649 1202 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AC006199.1-201ENST00000548728 219 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AC078814.3-201ENST00000553036 491 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.53□□□□□ -2
PDLIM3Q53GG5 SNORA59B-202ENST00000578183 701 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AC090616.3-201ENST00000582184 217 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 ELOCP29-201ENST00000588193 334 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AL162713.1-201ENST00000604480 262 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-6P-201ENST00000606623 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.53□□□□□ -2
PDLIM3Q53GG5 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
PDLIM3Q53GG5 AC002553.4-201ENST00000616896 331 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AP006437.1-201ENST00000641440 3685 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
PDLIM3Q53GG5 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
PDLIM3Q53GG5 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
PDLIM3Q53GG5 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 RNU6-461P-201ENST00000364195 107 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 RNU6-266P-201ENST00000364225 107 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 Y_RNA.324-201ENST00000365165 102 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AL133475.1-201ENST00000404414 305 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 RNU2-3P-201ENST00000410144 191 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 RNU4-26P-201ENST00000410270 107 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 CYCSP33-201ENST00000414485 327 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 HMGB1P9-201ENST00000429856 646 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 MTND1P2-201ENST00000430604 821 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AL445687.1-201ENST00000439946 251 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AL161651.1-201ENST00000440882 223 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 HMGN2P10-201ENST00000448085 265 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 RNU7-167P-201ENST00000459160 62 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AC087884.1-201ENST00000469738 328 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 RNU6-189P-201ENST00000516120 101 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 RNU6-273P-201ENST00000516937 96 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AC234778.2-201ENST00000566241 354 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 MIR3616-201ENST00000584070 92 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 AL357078.3-201ENST00000607528 618 ntBASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
PDLIM3Q53GG5 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 Y_RNA.86-201ENST00000363020 111 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 RNA5SP344-201ENST00000411081 104 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 RNU6-607P-201ENST00000411283 108 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 HMGN2P35-201ENST00000412164 270 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 CALM1P1-201ENST00000442082 433 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 AC011005.2-201ENST00000487324 359 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 RPL38P4-201ENST00000502376 214 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 AC116655.1-201ENST00000508324 901 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 HIGD1AP13-201ENST00000509878 289 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 OR11H5P-201ENST00000554039 926 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 MIR4319-201ENST00000577285 85 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 MIR3117-201ENST00000584034 78 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 AC123912.5-201ENST00000605470 343 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 AC090617.10-201ENST00000624308 134 ntBASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
PDLIM3Q53GG5 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.5□□□□□ -2.01
PDLIM3Q53GG5 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
PDLIM3Q53GG5 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
PDLIM3Q53GG5 AC010889.1-201ENST00000566193 2666 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms