Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC016831.2-201ENST00000417179 352 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC011233.1-201ENST00000422812 283 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC007283.2-201ENST00000424739 197 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA1P55317 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.4□□□□□ -2.19
FOXA1P55317 RPL7P34-201ENST00000433316 712 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC016691.1-201ENST00000441321 413 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC003071.1-201ENST00000451219 789 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC012308.1-201ENST00000451232 178 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AL583843.1-201ENST00000456070 346 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 CYP2C59P-201ENST00000457790 269 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 RPL7P43-201ENST00000478876 753 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA1P55317 AC010587.1-201ENST00000505809 469 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.4□□□□□ -2.19
FOXA1P55317 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA1P55317 Y_RNA.675-201ENST00000516389 149 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 RNU5B-3P-201ENST00000516601 115 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA1P55317 GNAI2P1-201ENST00000541815 315 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.4□□□□□ -2.19
FOXA1P55317 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA1P55317 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA1P55317 AC015720.1-201ENST00000565251 277 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC012435.1-202ENST00000568772 240 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC002400.1-201ENST00000569310 726 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 MIR4529-201ENST00000578110 78 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC234772.3-201ENST00000602277 528 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AL645939.4-201ENST00000604495 135 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AL031775.1-201ENST00000607014 887 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC027807.2-201ENST00000616099 408 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC092140.2-201ENST00000618027 521 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.4□□□□□ -2.19
FOXA1P55317 AC024940.5-201ENST00000622889 474 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
FOXA1P55317 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.39□□□□□ -2.19
FOXA1P55317 AC073343.1-201ENST00000328239 651 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 SNORD3E-201ENST00000362899 217 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 RNU1-42P-201ENST00000364033 160 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 SNORA72.3-201ENST00000365074 132 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 RNU6-39P-201ENST00000384344 107 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 MIR517C-201ENST00000385103 95 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.39□□□□□ -2.19
FOXA1P55317 AC074117.2-201ENST00000417130 397 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AC009518.2-201ENST00000418056 731 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AC119618.1-201ENST00000434191 222 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.39□□□□□ -2.19
FOXA1P55317 AL360221.1-201ENST00000445989 335 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.39□□□□□ -2.19
FOXA1P55317 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC1.39□□□□□ -2.19
FOXA1P55317 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC1.39□□□□□ -2.19
FOXA1P55317 AC087884.1-201ENST00000469738 328 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 RN7SKP265-201ENST00000516448 223 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.39□□□□□ -2.19
FOXA1P55317 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.39□□□□□ -2.19
FOXA1P55317 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AP004607.1-201ENST00000524456 203 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
FOXA1P55317 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
FOXA1P55317 AC135279.1-201ENST00000543493 504 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AC092325.1-201ENST00000566449 554 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 MIR4498-201ENST00000577599 66 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
FOXA1P55317 AL359999.1-201ENST00000604513 294 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AL022154.1-201ENST00000604698 785 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 RNU6-87P-201ENST00000607561 108 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AC126118.1-201ENST00000607744 628 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 AP003400.5-201ENST00000624827 617 ntBASIC1.39□□□□□ -2.19
FOXA1P55317 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.39□□□□□ -2.19
FOXA1P55317 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
FOXA1P55317 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.38□□□□□ -2.19
FOXA1P55317 Y_RNA.4-201ENST00000362333 112 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 RNU6-858P-201ENST00000362436 107 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 Y_RNA.164-201ENST00000363709 102 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 RNU6-60P-201ENST00000364792 103 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 RNU6-997P-201ENST00000384725 107 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC114491.1-201ENST00000416095 246 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AL589872.1-201ENST00000426602 288 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 VN1R108P-201ENST00000431580 830 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC009238.1-201ENST00000442165 424 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 MTND5P2-201ENST00000442927 1142 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC009237.6-201ENST00000446969 424 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 EPS15P1-201ENST00000448836 336 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 ZNF114P1-201ENST00000453500 292 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.38□□□□□ -2.19
FOXA1P55317 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.38□□□□□ -2.19
FOXA1P55317 AP000797.1-201ENST00000478870 387 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC107032.1-201ENST00000485945 480 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC1.38□□□□□ -2.19
FOXA1P55317 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC1.38□□□□□ -2.19
FOXA1P55317 SNORA3.4-201ENST00000515969 96 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 SNORA31.25-201ENST00000517242 134 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.38□□□□□ -2.19
FOXA1P55317 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.38□□□□□ -2.19
FOXA1P55317 AL713866.2-201ENST00000603579 219 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AL158032.1-201ENST00000605401 106 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC087045.1-201ENST00000605856 382 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.38□□□□□ -2.19
FOXA1P55317 RNU6-91P-201ENST00000607774 107 ntBASIC1.38□□□□□ -2.19
FOXA1P55317 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms