Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 PRELID2P1-201ENST00000552837 301 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.12□□□□□ -2.07
COL4A4P53420 SETP2-201ENST00000553886 926 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 OR4T1P-201ENST00000554933 911 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 SUB1P2-201ENST00000556401 297 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC100830.2-201ENST00000581636 240 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC011890.2-201ENST00000613393 294 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC130324.3-201ENST00000614165 542 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AL589994.2-201ENST00000621124 579 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.12□□□□□ -2.07
COL4A4P53420 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.12□□□□□ -2.07
COL4A4P53420 AP000553.5-201ENST00000641933 54 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
COL4A4P53420 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
COL4A4P53420 AL118496.1-201ENST00000440201 1812 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
COL4A4P53420 RNU6-661P-201ENST00000362409 107 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 Y_RNA.187-201ENST00000363918 113 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 RNY1P12-201ENST00000364251 105 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 Y_RNA.339-201ENST00000365325 102 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 Y_RNA.459-201ENST00000384251 102 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 MIR568-201ENST00000385036 95 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
COL4A4P53420 HMGB1P17-201ENST00000403495 628 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 AC092634.6-201ENST00000418558 192 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.11□□□□□ -2.07
COL4A4P53420 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.11□□□□□ -2.07
COL4A4P53420 TRGVB-201ENST00000453257 471 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 MTND5P22-201ENST00000458380 195 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 AC010587.1-201ENST00000505809 469 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 RNU6-835P-201ENST00000516974 104 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.11□□□□□ -2.07
COL4A4P53420 AC107953.1-201ENST00000522216 297 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 CASP1-212ENST00000531166 300 ntTSL 5 BASIC2.11□□□□□ -2.07
COL4A4P53420 POLR3GP2-201ENST00000588366 668 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 AC002984.1-201ENST00000591692 448 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 AC005336.3-201ENST00000623833 2679 ntBASIC2.11□□□□□ -2.07
COL4A4P53420 FAM35CP-201ENST00000554755 2470 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 Y_RNA.46-201ENST00000362695 102 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 Y_RNA.193-201ENST00000363979 102 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 RNU6-169P-201ENST00000365336 107 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 SNORA20.2-201ENST00000383922 131 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 RNU6-43P-201ENST00000384302 107 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 RNU6-196P-201ENST00000384315 107 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 RNU2-9P-201ENST00000410194 145 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 RNU2-62P-201ENST00000410868 191 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 RNU6-1148P-201ENST00000410992 104 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 GPR143P-201ENST00000434155 205 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 RPS15AP9-201ENST00000439856 381 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 DDX3P2-201ENST00000446138 111 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.1□□□□□ -2.07
COL4A4P53420 RNU7-152P-201ENST00000458982 64 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.1□□□□□ -2.07
COL4A4P53420 AC010265.1-201ENST00000513509 211 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 RNU6-1046P-201ENST00000516538 107 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 RNU6-1137P-201ENST00000517073 99 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.1□□□□□ -2.07
COL4A4P53420 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
COL4A4P53420 BNIP3P6-201ENST00000549284 499 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.1□□□□□ -2.07
COL4A4P53420 SUB1P3-201ENST00000564581 315 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 AC007151.1-201ENST00000572774 483 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 MIR4742-201ENST00000581069 85 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 CTHRC1P1-201ENST00000605383 469 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 AC004908.2-201ENST00000609090 574 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 uc_338.22-201ENST00000622722 187 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 AC084768.2-201ENST00000622736 221 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 AC079597.1-201ENST00000624306 508 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 AC100810.6-201ENST00000638068 285 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL4A4P53420 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
COL4A4P53420 AC092447.10-201ENST00000620607 1652 ntBASIC2.1□□□□□ -2.07
COL4A4P53420 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.1□□□□□ -2.07
COL4A4P53420 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
COL4A4P53420 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
COL4A4P53420 AC011155.1-201ENST00000316512 456 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 RNU6-996P-201ENST00000365438 107 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 RNU6-657P-201ENST00000383904 107 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 SNORA51.11-201ENST00000384442 131 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 HMGN2P35-201ENST00000412164 270 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 MTCO2P27-201ENST00000420740 428 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
COL4A4P53420 AC007283.2-201ENST00000424739 197 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 CBX3P6-201ENST00000430257 527 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.09□□□□□ -2.07
COL4A4P53420 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 Y_RNA.639-201ENST00000458981 102 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 AC140059.1-201ENST00000489238 361 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 AC090453.1-201ENST00000495560 436 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 EIF4EP3-201ENST00000498782 656 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 AC091885.1-201ENST00000506658 268 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 TMEM248P1-201ENST00000510579 951 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms