Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC008121.3-201ENST00000618726 433 ntBASIC2.02□□□□□ -2.09
MSH6P52701 AC103710.2-202ENST00000641454 2853 ntBASIC2.02□□□□□ -2.09
MSH6P52701 FCF1P10-201ENST00000407590 479 ntBASIC2.01□□□□□ -2.09
MSH6P52701 OR51A5P-201ENST00000415429 942 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.01□□□□□ -2.09
MSH6P52701 AC007560.1-201ENST00000426912 237 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AC093106.2-201ENST00000428212 385 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AL365400.1-201ENST00000431854 640 ntBASIC2.01□□□□□ -2.09
MSH6P52701 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.01□□□□□ -2.09
MSH6P52701 AL590365.1-201ENST00000450788 243 ntBASIC2.01□□□□□ -2.09
MSH6P52701 RPS29P1-201ENST00000465274 159 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
MSH6P52701 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.01□□□□□ -2.09
MSH6P52701 AC009094.1-201ENST00000564443 426 ntBASIC2.01□□□□□ -2.09
MSH6P52701 ROCK1P1-201ENST00000573767 549 ntBASIC2.01□□□□□ -2.09
MSH6P52701 MIR3167-201ENST00000579623 85 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AC073544.2-201ENST00000601155 540 ntBASIC2.01□□□□□ -2.09
MSH6P52701 RNU6-87P-201ENST00000607561 108 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AC005332.10-201ENST00000612725 619 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AC027807.2-201ENST00000616099 408 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AC092140.2-201ENST00000618027 521 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AC017037.3-201ENST00000625016 472 ntBASIC2.01□□□□□ -2.09
MSH6P52701 Z99571.1-201ENST00000636677 394 ntBASIC2.01□□□□□ -2.09
MSH6P52701 AC121333.1-201ENST00000567488 2709 ntBASIC2.01□□□□□ -2.09
MSH6P52701 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.01□□□□□ -2.09
MSH6P52701 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2□□□□□ -2.09
MSH6P52701 RNU5F-6P-201ENST00000362979 116 ntBASIC2□□□□□ -2.09
MSH6P52701 RNU4-1-201ENST00000363925 141 ntBASIC2□□□□□ -2.09
MSH6P52701 RNA5SP363-201ENST00000365072 115 ntBASIC2□□□□□ -2.09
MSH6P52701 RNU6-946P-201ENST00000383878 107 ntBASIC2□□□□□ -2.09
MSH6P52701 RNU6-19P-201ENST00000384718 107 ntBASIC2□□□□□ -2.09
MSH6P52701 MIR520E-201ENST00000384867 87 ntBASIC2□□□□□ -2.09
MSH6P52701 MIR301A-201ENST00000385261 86 ntBASIC2□□□□□ -2.09
MSH6P52701 AL109913.1-201ENST00000421173 514 ntBASIC2□□□□□ -2.09
MSH6P52701 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2□□□□□ -2.09
MSH6P52701 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2□□□□□ -2.09
MSH6P52701 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2□□□□□ -2.09
MSH6P52701 AC004383.1-201ENST00000438135 289 ntBASIC2□□□□□ -2.09
MSH6P52701 AL136380.1-201ENST00000447970 162 ntBASIC2□□□□□ -2.09
MSH6P52701 AL139824.2-201ENST00000458731 1095 ntBASIC2□□□□□ -2.09
MSH6P52701 AC023141.11-201ENST00000508864 202 ntBASIC2□□□□□ -2.09
MSH6P52701 RNU6-581P-201ENST00000516214 105 ntBASIC2□□□□□ -2.09
MSH6P52701 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2□□□□□ -2.09
MSH6P52701 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2□□□□□ -2.09
MSH6P52701 AC011979.2-201ENST00000527568 352 ntBASIC2□□□□□ -2.09
MSH6P52701 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
MSH6P52701 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
MSH6P52701 LINC00933-203ENST00000559812 219 ntBASIC2□□□□□ -2.09
MSH6P52701 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2□□□□□ -2.09
MSH6P52701 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2□□□□□ -2.09
MSH6P52701 MIR5571-201ENST00000577998 113 ntBASIC2□□□□□ -2.09
MSH6P52701 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2□□□□□ -2.09
MSH6P52701 AC010928.2-201ENST00000588017 287 ntBASIC2□□□□□ -2.09
MSH6P52701 AL031775.1-201ENST00000607014 887 ntBASIC2□□□□□ -2.09
MSH6P52701 AC022893.3-201ENST00000607665 437 ntBASIC2□□□□□ -2.09
MSH6P52701 AL355816.2-201ENST00000610049 647 ntBASIC2□□□□□ -2.09
MSH6P52701 AC138749.5-201ENST00000611461 208 ntBASIC2□□□□□ -2.09
MSH6P52701 AC116165.2-201ENST00000616705 206 ntBASIC2□□□□□ -2.09
MSH6P52701 MIR6134-201ENST00000617606 109 ntBASIC2□□□□□ -2.09
MSH6P52701 AC023510.2-201ENST00000622162 746 ntBASIC2□□□□□ -2.09
MSH6P52701 MIR7157-201ENST00000635801 60 ntBASIC2□□□□□ -2.09
MSH6P52701 U6.99-201ENST00000637524 83 ntBASIC2□□□□□ -2.09
MSH6P52701 TEX21P-201ENST00000447107 1476 ntBASIC2□□□□□ -2.09
MSH6P52701 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.99□□□□□ -2.09
MSH6P52701 MTCYBP36-201ENST00000404146 440 ntBASIC1.99□□□□□ -2.09
MSH6P52701 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC1.99□□□□□ -2.09
MSH6P52701 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.99□□□□□ -2.09
MSH6P52701 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.99□□□□□ -2.09
MSH6P52701 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.99□□□□□ -2.09
MSH6P52701 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.99□□□□□ -2.09
MSH6P52701 ZNF736P8Y-201ENST00000451913 669 ntBASIC1.99□□□□□ -2.09
MSH6P52701 AC093899.1-201ENST00000457984 376 ntBASIC1.99□□□□□ -2.09
MSH6P52701 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.99□□□□□ -2.09
MSH6P52701 AC109927.2-201ENST00000506416 303 ntBASIC1.99□□□□□ -2.09
MSH6P52701 RN7SKP287-201ENST00000516546 266 ntBASIC1.99□□□□□ -2.09
MSH6P52701 RNU2-44P-201ENST00000516795 194 ntBASIC1.99□□□□□ -2.09
MSH6P52701 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.99□□□□□ -2.09
MSH6P52701 AP003181.2-201ENST00000528941 181 ntBASIC1.99□□□□□ -2.09
MSH6P52701 AP005435.4-201ENST00000529514 284 ntBASIC1.99□□□□□ -2.09
MSH6P52701 AC010186.2-204ENST00000537668 439 ntBASIC1.99□□□□□ -2.09
MSH6P52701 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.99□□□□□ -2.09
MSH6P52701 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.99□□□□□ -2.09
MSH6P52701 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.99□□□□□ -2.09
MSH6P52701 MIR4760-201ENST00000585040 80 ntBASIC1.99□□□□□ -2.09
MSH6P52701 AL359999.1-201ENST00000604513 294 ntBASIC1.99□□□□□ -2.09
MSH6P52701 AL021997.1-201ENST00000605757 193 ntBASIC1.99□□□□□ -2.09
MSH6P52701 AC130324.3-201ENST00000614165 542 ntBASIC1.99□□□□□ -2.09
MSH6P52701 MIR6788-201ENST00000618842 66 ntBASIC1.99□□□□□ -2.09
MSH6P52701 AC009878.1-201ENST00000621819 340 ntBASIC1.99□□□□□ -2.09
MSH6P52701 CDC27P3-201ENST00000635418 1910 ntBASIC1.99□□□□□ -2.09
MSH6P52701 RNU6-234P-201ENST00000365229 104 ntBASIC1.98□□□□□ -2.09
MSH6P52701 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
MSH6P52701 SNORD23.1-201ENST00000408212 104 ntBASIC1.98□□□□□ -2.09
MSH6P52701 RNU6-920P-201ENST00000410926 92 ntBASIC1.98□□□□□ -2.09
MSH6P52701 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.98□□□□□ -2.09
MSH6P52701 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.98□□□□□ -2.09
MSH6P52701 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.98□□□□□ -2.09
MSH6P52701 PTGES3P4-201ENST00000426243 356 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AL591212.2-201ENST00000433923 257 ntBASIC1.98□□□□□ -2.09
MSH6P52701 FABP5P14-201ENST00000437273 393 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms