Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SCARNA17.4-201ENST00000614296 143 ntBASIC3.08□□□□□ -1.92
CTCFP49711 U4.5-201ENST00000617137 123 ntBASIC3.08□□□□□ -1.92
CTCFP49711 U6.99-201ENST00000637524 83 ntBASIC3.08□□□□□ -1.92
CTCFP49711 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.08□□□□□ -1.92
CTCFP49711 AC026241.1-201ENST00000517873 2142 ntBASIC3.07□□□□□ -1.92
CTCFP49711 Y_RNA.116-201ENST00000363292 103 ntBASIC3.07□□□□□ -1.92
CTCFP49711 RNU6-715P-201ENST00000365204 103 ntBASIC3.07□□□□□ -1.92
CTCFP49711 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
CTCFP49711 SNORA69-201ENST00000383895 132 ntBASIC3.07□□□□□ -1.92
CTCFP49711 RNU6-483P-201ENST00000384088 108 ntBASIC3.07□□□□□ -1.92
CTCFP49711 RNU6-1127P-201ENST00000384580 107 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AL590002.1-201ENST00000406554 418 ntBASIC3.07□□□□□ -1.92
CTCFP49711 RPL21P90-201ENST00000415692 466 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AC007560.1-201ENST00000426912 237 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.07□□□□□ -1.92
CTCFP49711 MTND1P4-201ENST00000435196 415 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AL078601.1-201ENST00000444542 271 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.07□□□□□ -1.92
CTCFP49711 HMGN2P10-201ENST00000448085 265 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AC011753.1-201ENST00000451001 220 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AL583843.1-201ENST00000456070 346 ntBASIC3.07□□□□□ -1.92
CTCFP49711 snoU13.18-201ENST00000459483 104 ntBASIC3.07□□□□□ -1.92
CTCFP49711 RPL31P41-201ENST00000477967 372 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.07□□□□□ -1.92
CTCFP49711 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.07□□□□□ -1.92
CTCFP49711 RN7SL636P-201ENST00000497504 294 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AC098799.2-201ENST00000509466 868 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.07□□□□□ -1.92
CTCFP49711 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.07□□□□□ -1.92
CTCFP49711 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.07□□□□□ -1.92
CTCFP49711 AP003033.1-201ENST00000527244 415 ntBASIC3.07□□□□□ -1.92
CTCFP49711 NACAP3-201ENST00000552100 481 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.07□□□□□ -1.92
CTCFP49711 MIR5583-1-201ENST00000580941 59 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.07□□□□□ -1.92
CTCFP49711 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.07□□□□□ -1.92
CTCFP49711 AC068137.3-201ENST00000639191 341 ntBASIC3.07□□□□□ -1.92
CTCFP49711 AC073869.6-201ENST00000640656 341 ntBASIC3.07□□□□□ -1.92
CTCFP49711 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.07□□□□□ -1.92
CTCFP49711 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.07□□□□□ -1.92
CTCFP49711 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.07□□□□□ -1.92
CTCFP49711 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CTCFP49711 MIR412-201ENST00000362142 91 ntBASIC3.06□□□□□ -1.92
CTCFP49711 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CTCFP49711 RNU6-1179P-201ENST00000384667 107 ntBASIC3.06□□□□□ -1.92
CTCFP49711 SNORD88.1-201ENST00000408684 91 ntBASIC3.06□□□□□ -1.92
CTCFP49711 RNU6-648P-201ENST00000410190 107 ntBASIC3.06□□□□□ -1.92
CTCFP49711 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.06□□□□□ -1.92
CTCFP49711 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.06□□□□□ -1.92
CTCFP49711 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.06□□□□□ -1.92
CTCFP49711 NDUFB1P2-201ENST00000449477 176 ntBASIC3.06□□□□□ -1.92
CTCFP49711 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC3.06□□□□□ -1.92
CTCFP49711 SNRPFP3-201ENST00000457792 225 ntBASIC3.06□□□□□ -1.92
CTCFP49711 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.06□□□□□ -1.92
CTCFP49711 AC008716.1-201ENST00000511084 513 ntBASIC3.06□□□□□ -1.92
CTCFP49711 RNU6-1178P-201ENST00000516674 107 ntBASIC3.06□□□□□ -1.92
CTCFP49711 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.06□□□□□ -1.92
CTCFP49711 OR5AQ1P-201ENST00000527596 927 ntBASIC3.06□□□□□ -1.92
CTCFP49711 AL157687.1-201ENST00000554853 619 ntBASIC3.06□□□□□ -1.92
CTCFP49711 MIR4782-201ENST00000577987 79 ntBASIC3.06□□□□□ -1.92
CTCFP49711 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.06□□□□□ -1.92
CTCFP49711 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.05□□□□□ -1.92
CTCFP49711 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CTCFP49711 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CTCFP49711 VTRNA1-1-201ENST00000363120 99 ntBASIC3.05□□□□□ -1.92
CTCFP49711 SNORD14B-201ENST00000364533 90 ntBASIC3.05□□□□□ -1.92
CTCFP49711 SNORA68.1-201ENST00000364537 132 ntBASIC3.05□□□□□ -1.92
CTCFP49711 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
CTCFP49711 RNU1-109P-201ENST00000383960 147 ntBASIC3.05□□□□□ -1.92
CTCFP49711 RNU6-45P-201ENST00000384471 107 ntBASIC3.05□□□□□ -1.92
CTCFP49711 MIR518D-201ENST00000385014 87 ntBASIC3.05□□□□□ -1.92
CTCFP49711 AL513475.1-201ENST00000406602 315 ntBASIC3.05□□□□□ -1.92
CTCFP49711 MIR548F1-201ENST00000408667 84 ntBASIC3.05□□□□□ -1.92
CTCFP49711 RNU2-49P-201ENST00000410666 184 ntBASIC3.05□□□□□ -1.92
CTCFP49711 Y_RNA.619-201ENST00000410951 90 ntBASIC3.05□□□□□ -1.92
CTCFP49711 Y_RNA.623-201ENST00000411128 95 ntBASIC3.05□□□□□ -1.92
CTCFP49711 AC096649.2-201ENST00000416186 393 ntBASIC3.05□□□□□ -1.92
CTCFP49711 AL353621.1-201ENST00000418219 243 ntBASIC3.05□□□□□ -1.92
CTCFP49711 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.05□□□□□ -1.92
CTCFP49711 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.05□□□□□ -1.92
CTCFP49711 RPS12P2-201ENST00000439728 269 ntBASIC3.05□□□□□ -1.92
CTCFP49711 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC3.05□□□□□ -1.92
CTCFP49711 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.05□□□□□ -1.92
CTCFP49711 RPS15AP27-201ENST00000449183 343 ntBASIC3.05□□□□□ -1.92
CTCFP49711 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.05□□□□□ -1.92
CTCFP49711 FAM92A1P2-202ENST00000504766 877 ntBASIC3.05□□□□□ -1.92
CTCFP49711 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.05□□□□□ -1.92
CTCFP49711 AC104136.1-201ENST00000512969 394 ntBASIC3.05□□□□□ -1.92
CTCFP49711 RNU1-86P-201ENST00000516108 154 ntBASIC3.05□□□□□ -1.92
CTCFP49711 RNA5SP320-201ENST00000516263 124 ntBASIC3.05□□□□□ -1.92
CTCFP49711 RNA5SP282-201ENST00000516355 108 ntBASIC3.05□□□□□ -1.92
CTCFP49711 RNU1-107P-201ENST00000516617 154 ntBASIC3.05□□□□□ -1.92
CTCFP49711 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.05□□□□□ -1.92
CTCFP49711 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.05□□□□□ -1.92
CTCFP49711 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.05□□□□□ -1.92
CTCFP49711 AL137161.1-201ENST00000532231 390 ntBASIC3.05□□□□□ -1.92
CTCFP49711 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.05□□□□□ -1.92
CTCFP49711 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.05□□□□□ -1.92
CTCFP49711 AC021739.1-201ENST00000559631 174 ntBASIC3.05□□□□□ -1.92
CTCFP49711 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms