Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.94□□□□□ -2.1
SHMT2P34897 AC104058.1-201ENST00000448028 297 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.94□□□□□ -2.1
SHMT2P34897 RNU1-86P-201ENST00000516108 154 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 SNORD27.1-201ENST00000516319 72 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 RNU5B-3P-201ENST00000516601 115 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 RNU1-107P-201ENST00000516617 154 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 CBX3P7-201ENST00000532876 502 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 AP002453.2-201ENST00000533503 320 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 AC007834.2-201ENST00000536310 343 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 MTND3P12-201ENST00000559068 328 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 AC137800.2-201ENST00000574375 120 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 MTCYBP33-201ENST00000575007 1130 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 AC121247.2-201ENST00000604776 136 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 MIR98-201ENST00000606724 119 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 AP001486.3-201ENST00000615334 372 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 AC009233.1-201ENST00000616477 371 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 uc_338.20-201ENST00000621563 178 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 AC091932.3-201ENST00000624223 323 ntBASIC1.94□□□□□ -2.1
SHMT2P34897 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.94□□□□□ -2.1
SHMT2P34897 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.94□□□□□ -2.1
SHMT2P34897 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.94□□□□□ -2.1
SHMT2P34897 CENPCP1-201ENST00000533085 2578 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.93□□□□□ -2.1
SHMT2P34897 MTND5P17-201ENST00000418405 1603 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.93□□□□□ -2.1
SHMT2P34897 RNU6-371P-201ENST00000364283 108 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 GSTA9P-201ENST00000406231 611 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 RN7SKP284-201ENST00000411002 343 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.93□□□□□ -2.1
SHMT2P34897 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.93□□□□□ -2.1
SHMT2P34897 CETN4P-201ENST00000432407 469 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AL121890.1-201ENST00000435457 205 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.93□□□□□ -2.1
SHMT2P34897 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.93□□□□□ -2.1
SHMT2P34897 CALM1P1-201ENST00000442082 433 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AC079781.2-201ENST00000446424 169 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 BET1P1-201ENST00000482276 359 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AP005902.1-201ENST00000521358 186 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AP004607.1-201ENST00000524456 203 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AP000873.5-201ENST00000533906 236 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.93□□□□□ -2.1
SHMT2P34897 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.93□□□□□ -2.1
SHMT2P34897 AL133241.1-201ENST00000556832 487 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.93□□□□□ -2.1
SHMT2P34897 AC136619.2-201ENST00000563361 631 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.93□□□□□ -2.1
SHMT2P34897 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.93□□□□□ -2.1
SHMT2P34897 AC098848.2-201ENST00000588023 330 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 AC078899.2-201ENST00000595282 212 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 BNIP3P30-201ENST00000601184 574 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 SNORD14A-201ENST00000606526 91 ntBASIC1.93□□□□□ -2.1
SHMT2P34897 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.93□□□□□ -2.1
SHMT2P34897 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SHMT2P34897 RBBP8P1-201ENST00000449447 1844 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SHMT2P34897 Y_RNA.201-201ENST00000364052 96 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 SNORD116-8-201ENST00000384365 95 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 MIR17-201ENST00000385012 84 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SHMT2P34897 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SHMT2P34897 AC019129.1-201ENST00000403786 261 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 MIR1302-8-201ENST00000408342 128 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 RNU2-2P-201ENST00000410396 191 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 RN7SKP142-201ENST00000411236 328 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 RNA5SP111-201ENST00000411386 101 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.92□□□□□ -2.1
SHMT2P34897 C1DP2-201ENST00000418167 426 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.92□□□□□ -2.1
SHMT2P34897 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.92□□□□□ -2.1
SHMT2P34897 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.92□□□□□ -2.1
SHMT2P34897 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.92□□□□□ -2.1
SHMT2P34897 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.92□□□□□ -2.1
SHMT2P34897 AC244505.5-201ENST00000443639 207 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 RPL7P12-201ENST00000446719 750 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.92□□□□□ -2.1
SHMT2P34897 AC079448.1-201ENST00000449377 373 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 snoU109.2-201ENST00000459316 135 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 snoU13.15-201ENST00000459407 104 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.92□□□□□ -2.1
SHMT2P34897 HMGB1P30-201ENST00000492455 606 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.92□□□□□ -2.1
SHMT2P34897 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.92□□□□□ -2.1
SHMT2P34897 AF213884.2-201ENST00000510417 903 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC1.92□□□□□ -2.1
SHMT2P34897 Y_RNA.687-201ENST00000516558 91 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AC026407.1-201ENST00000518369 204 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 FAM92A1P1-201ENST00000528023 890 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 OR5AL2P-201ENST00000532185 920 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 OSBPL9P5-201ENST00000542581 171 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.92□□□□□ -2.1
SHMT2P34897 AC073539.2-201ENST00000597113 165 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AC245014.2-201ENST00000603689 287 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AL138963.2-201ENST00000605137 226 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AL670379.4-201ENST00000605279 254 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 AC246785.4-201ENST00000605374 287 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 U2.15-201ENST00000611544 191 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 U2.16-201ENST00000613119 191 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 U2.12-201ENST00000613778 191 ntBASIC1.92□□□□□ -2.1
SHMT2P34897 U2.20-201ENST00000613956 192 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms