Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 CR383656.8-201ENST00000549046 145 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC068338.1-201ENST00000565567 176 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC025678.1-201ENST00000567861 338 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 MIR4421-201ENST00000578133 69 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC068620.3-201ENST00000602749 560 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AL355472.4-201ENST00000610233 626 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC004908.3-201ENST00000610248 625 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC009269.6-201ENST00000621778 588 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
HLA-DMBP28068 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 RNU6-858P-201ENST00000362436 107 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 Y_RNA.33-201ENST00000362591 102 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 Y_RNA.40-201ENST00000362645 93 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 Y_RNA.99-201ENST00000363138 105 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 RNU6-1210P-201ENST00000363775 107 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 SNORA75B-201ENST00000384053 137 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 SNORD26-201ENST00000384147 75 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 RNU6-298P-201ENST00000390888 96 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 RNU1-78P-201ENST00000391248 165 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC119751.3-201ENST00000399720 670 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 RNU6-321P-201ENST00000410912 106 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 UBE2V1P10-201ENST00000414685 269 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC015922.2-201ENST00000435593 184 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 LARP1BP3-201ENST00000437229 869 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AL121601.2-201ENST00000438019 707 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 RPS29P29-201ENST00000456396 171 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AP001025.1-201ENST00000486139 332 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC005840.1-201ENST00000498412 377 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 AP000907.2-201ENST00000530827 353 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC023813.2-201ENST00000564321 469 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC092325.1-201ENST00000566449 554 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 MIR4422-201ENST00000581938 83 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 MIR4781-201ENST00000585250 76 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC012065.4-201ENST00000602445 679 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC022893.3-201ENST00000607665 437 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 RNU6-1192P-201ENST00000612197 107 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 MIR8074-201ENST00000615081 81 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 RNU6-489P-201ENST00000618289 107 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC090517.3-201ENST00000625170 141 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.01□□□□□ -2.25
HLA-DMBP28068 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.01□□□□□ -2.25
HLA-DMBP28068 AC091812.1-201ENST00000432235 1948 ntBASIC1.01□□□□□ -2.25
HLA-DMBP28068 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.01□□□□□ -2.25
HLA-DMBP28068 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1□□□□□ -2.25
HLA-DMBP28068 ZNF29P-201ENST00000225587 168 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 Y_RNA.327-201ENST00000365201 102 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 RNU6-395P-201ENST00000365662 106 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 SMIM11P1-201ENST00000369586 178 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 Y_RNA.472-201ENST00000384322 102 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 RNU6-1257P-201ENST00000384625 110 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 MIR29B2-201ENST00000385055 81 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 RNU2-23P-201ENST00000410545 195 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 RPL30P13-201ENST00000418873 348 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 AL591212.2-201ENST00000433923 257 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 TIMM9P1-201ENST00000436122 256 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 AL035666.1-201ENST00000446195 348 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 PTENP1-201ENST00000447117 1215 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1□□□□□ -2.25
HLA-DMBP28068 AC005908.1-201ENST00000468701 347 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 HMGB1P30-201ENST00000492455 606 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 MTCYBP18-201ENST00000501056 747 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 SUMO2P5-201ENST00000506790 245 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 MTCYBP40-201ENST00000509390 1135 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 RNVU1-2-201ENST00000516326 135 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 RRN3P3-201ENST00000549207 578 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC1□□□□□ -2.25
HLA-DMBP28068 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1□□□□□ -2.25
HLA-DMBP28068 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1□□□□□ -2.25
HLA-DMBP28068 BCRP9-201ENST00000605312 388 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 AC006338.1-201ENST00000618453 749 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 AC006386.1-201ENST00000619436 415 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 AP003476.1-201ENST00000623984 516 ntBASIC1□□□□□ -2.25
HLA-DMBP28068 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1□□□□□ -2.25
HLA-DMBP28068 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1□□□□□ -2.25
HLA-DMBP28068 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC0.99□□□□□ -2.25
HLA-DMBP28068 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
HLA-DMBP28068 RNY1P10-201ENST00000363268 113 ntBASIC0.99□□□□□ -2.25
HLA-DMBP28068 RNU6-439P-201ENST00000384188 106 ntBASIC0.99□□□□□ -2.25
HLA-DMBP28068 RNU6-769P-201ENST00000384407 104 ntBASIC0.99□□□□□ -2.25
HLA-DMBP28068 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.99□□□□□ -2.25
HLA-DMBP28068 MIR758-201ENST00000390227 88 ntBASIC0.99□□□□□ -2.25
HLA-DMBP28068 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
HLA-DMBP28068 ERHP2-201ENST00000402323 299 ntBASIC0.99□□□□□ -2.25
HLA-DMBP28068 RNU2-72P-201ENST00000411175 163 ntBASIC0.99□□□□□ -2.25
HLA-DMBP28068 VPS26BP1-201ENST00000417155 755 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms