Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 uc_338.11-201ENST00000619132 160 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AC024581.2-201ENST00000619986 252 ntBASIC2.1□□□□□ -2.07
SDC1P18827 SCARNA4-202ENST00000625402 129 ntBASIC2.1□□□□□ -2.07
SDC1P18827 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.1□□□□□ -2.07
SDC1P18827 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SDC1P18827 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.1□□□□□ -2.07
SDC1P18827 RBBP8P1-201ENST00000449447 1844 ntBASIC2.1□□□□□ -2.07
SDC1P18827 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.1□□□□□ -2.07
SDC1P18827 Z75746.1-201ENST00000440243 2080 ntBASIC2.1□□□□□ -2.07
SDC1P18827 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.09□□□□□ -2.07
SDC1P18827 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SDC1P18827 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.09□□□□□ -2.07
SDC1P18827 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SDC1P18827 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
SDC1P18827 OR4G2P-201ENST00000328113 903 ntBASIC2.09□□□□□ -2.07
SDC1P18827 Y_RNA.381-201ENST00000365666 102 ntBASIC2.09□□□□□ -2.07
SDC1P18827 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
SDC1P18827 RNU6-1127P-201ENST00000384580 107 ntBASIC2.09□□□□□ -2.07
SDC1P18827 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SDC1P18827 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SDC1P18827 BTF3P7-201ENST00000407097 488 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AL663109.1-201ENST00000411498 844 ntBASIC2.09□□□□□ -2.07
SDC1P18827 MORF4L1P6-201ENST00000418771 268 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AC097463.2-201ENST00000421074 142 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.09□□□□□ -2.07
SDC1P18827 AC010975.2-201ENST00000427781 588 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.09□□□□□ -2.07
SDC1P18827 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.09□□□□□ -2.07
SDC1P18827 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.09□□□□□ -2.07
SDC1P18827 RNU7-26P-201ENST00000458980 63 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AC080013.2-201ENST00000460866 323 ntBASIC2.09□□□□□ -2.07
SDC1P18827 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.09□□□□□ -2.07
SDC1P18827 MTCO3P7-201ENST00000510008 774 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AC104136.1-201ENST00000512969 394 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.09□□□□□ -2.07
SDC1P18827 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.09□□□□□ -2.07
SDC1P18827 AC079598.5-201ENST00000547460 117 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.09□□□□□ -2.07
SDC1P18827 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.09□□□□□ -2.07
SDC1P18827 BNIP3P30-201ENST00000601184 574 ntBASIC2.09□□□□□ -2.07
SDC1P18827 NDUFA8P1-201ENST00000605525 367 ntBASIC2.09□□□□□ -2.07
SDC1P18827 RNU6-91P-201ENST00000607774 107 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AC069294.1-201ENST00000608397 350 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AC007684.1-201ENST00000609671 477 ntBASIC2.09□□□□□ -2.07
SDC1P18827 Z99129.1-201ENST00000612510 255 ntBASIC2.09□□□□□ -2.07
SDC1P18827 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.09□□□□□ -2.07
SDC1P18827 AC244517.12-201ENST00000623581 663 ntBASIC2.09□□□□□ -2.07
SDC1P18827 AC005609.4-201ENST00000625071 447 ntBASIC2.09□□□□□ -2.07
SDC1P18827 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.08□□□□□ -2.08
SDC1P18827 MTND5P26-201ENST00000426018 1752 ntBASIC2.08□□□□□ -2.08
SDC1P18827 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SDC1P18827 AC006020.1-201ENST00000420179 1854 ntBASIC2.08□□□□□ -2.08
SDC1P18827 Y_RNA.1-201ENST00000352915 104 ntBASIC2.08□□□□□ -2.08
SDC1P18827 RNU6-552P-201ENST00000362869 119 ntBASIC2.08□□□□□ -2.08
SDC1P18827 RNU1-72P-201ENST00000362976 153 ntBASIC2.08□□□□□ -2.08
SDC1P18827 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SDC1P18827 SNORA16.2-201ENST00000390991 127 ntBASIC2.08□□□□□ -2.08
SDC1P18827 RNU6-903P-201ENST00000391270 109 ntBASIC2.08□□□□□ -2.08
SDC1P18827 U6atac.2-201ENST00000408644 118 ntBASIC2.08□□□□□ -2.08
SDC1P18827 RNU6-1140P-201ENST00000410517 106 ntBASIC2.08□□□□□ -2.08
SDC1P18827 RNU4-55P-201ENST00000410731 137 ntBASIC2.08□□□□□ -2.08
SDC1P18827 MTND1P23-201ENST00000416931 372 ntBASIC2.08□□□□□ -2.08
SDC1P18827 MTCYBP8-201ENST00000422855 651 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.08□□□□□ -2.08
SDC1P18827 EEF1B2P7-201ENST00000451177 676 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AL122001.1-201ENST00000457027 370 ntBASIC2.08□□□□□ -2.08
SDC1P18827 RNU7-63P-201ENST00000459054 62 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AP001486.1-201ENST00000463339 476 ntBASIC2.08□□□□□ -2.08
SDC1P18827 DYNLL1P5-201ENST00000467158 270 ntBASIC2.08□□□□□ -2.08
SDC1P18827 GMFBP1-201ENST00000467831 427 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AC018437.1-201ENST00000492214 406 ntBASIC2.08□□□□□ -2.08
SDC1P18827 RPL22P13-201ENST00000493291 347 ntBASIC2.08□□□□□ -2.08
SDC1P18827 MTND2P33-201ENST00000506452 1031 ntBASIC2.08□□□□□ -2.08
SDC1P18827 HMGB3P3-201ENST00000510526 400 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AC074344.1-201ENST00000512823 224 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AC105417.1-201ENST00000514691 285 ntBASIC2.08□□□□□ -2.08
SDC1P18827 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.08□□□□□ -2.08
SDC1P18827 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.08□□□□□ -2.08
SDC1P18827 AP003392.2-201ENST00000527269 208 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.08□□□□□ -2.08
SDC1P18827 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.08□□□□□ -2.08
SDC1P18827 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.08□□□□□ -2.08
SDC1P18827 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.08□□□□□ -2.08
SDC1P18827 MIR5571-201ENST00000577998 113 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.08□□□□□ -2.08
SDC1P18827 MIR5002-201ENST00000584713 97 ntBASIC2.08□□□□□ -2.08
SDC1P18827 RPS15AP11-201ENST00000594193 385 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AC078795.2-201ENST00000602835 1252 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AC097065.2-201ENST00000608159 533 ntBASIC2.08□□□□□ -2.08
SDC1P18827 AL031601.2-202ENST00000622650 282 ntBASIC2.08□□□□□ -2.08
SDC1P18827 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.08□□□□□ -2.08
SDC1P18827 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.08□□□□□ -2.08
SDC1P18827 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SDC1P18827 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
SDC1P18827 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
SDC1P18827 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
SDC1P18827 RNU6-843P-201ENST00000384454 104 ntBASIC2.07□□□□□ -2.08
SDC1P18827 SNORD116-20-201ENST00000384529 92 ntBASIC2.07□□□□□ -2.08
SDC1P18827 RNU6-1158P-201ENST00000391167 107 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 158.1 ms