Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AP002826.1-201ENST00000608835 315 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AL590410.1-201ENST00000617925 333 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AC010809.3-201ENST00000621310 641 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 SNORA81-201ENST00000408493 178 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.15□□□□□ -2.39
COL6A3P12111 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC0.15□□□□□ -2.39
COL6A3P12111 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC0.15□□□□□ -2.39
COL6A3P12111 LY96-202ENST00000518893 430 ntTSL 3 BASIC0.15□□□□□ -2.39
COL6A3P12111 AC107953.1-201ENST00000522216 297 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AC104417.1-201ENST00000523974 751 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AL022345.1-201ENST00000607292 135 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AL078604.3-201ENST00000615580 211 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 uc_338.17-201ENST00000619633 179 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
COL6A3P12111 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
COL6A3P12111 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.14□□□□□ -2.39
COL6A3P12111 RNU6-272P-201ENST00000411028 104 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC0.14□□□□□ -2.39
COL6A3P12111 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC0.14□□□□□ -2.39
COL6A3P12111 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC0.14□□□□□ -2.39
COL6A3P12111 AC006512.1-201ENST00000468816 291 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AC108729.1-201ENST00000487812 947 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.14□□□□□ -2.39
COL6A3P12111 RNU7-40P-201ENST00000516397 64 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AP001893.2-201ENST00000526949 202 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.14□□□□□ -2.39
COL6A3P12111 AL359212.1-201ENST00000556608 614 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AL356432.3-201ENST00000568952 465 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AC079791.1-201ENST00000605356 973 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.14□□□□□ -2.39
COL6A3P12111 MTND4P16-201ENST00000466108 1367 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 RNU6-1079P-201ENST00000362861 110 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 RNU6-514P-201ENST00000384208 107 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 SNORD75.1-201ENST00000408373 60 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC0.14□□□□□ -2.39
COL6A3P12111 AC245102.2-201ENST00000448956 180 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 RNU6-775P-201ENST00000459318 96 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 MIR4667-201ENST00000578933 66 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 uc_338.34-201ENST00000617467 174 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AC099842.1-201ENST00000619919 596 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 RNU6-1293P-201ENST00000384077 107 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AC069282.1-201ENST00000411911 526 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.14□□□□□ -2.39
COL6A3P12111 AC244023.1-201ENST00000426884 112 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.14□□□□□ -2.39
COL6A3P12111 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
COL6A3P12111 AC093677.1-201ENST00000514414 678 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 DUXAP1-201ENST00000556632 463 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AC105224.1-201ENST00000587055 421 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AC242498.1-201ENST00000604134 111 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AC068276.1-201ENST00000605793 379 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 AC243994.1-201ENST00000618627 109 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 RNU6-156P-201ENST00000621869 107 ntBASIC0.14□□□□□ -2.39
COL6A3P12111 ENSAP3-201ENST00000312710 333 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 SNORD115-3-201ENST00000363100 82 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 U3.9-201ENST00000363823 204 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.13□□□□□ -2.39
COL6A3P12111 Y_RNA.432-201ENST00000384087 111 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 AC024082.2-201ENST00000434771 238 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.13□□□□□ -2.39
COL6A3P12111 AC091489.2-201ENST00000566263 604 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 MIR4713-201ENST00000582691 75 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 MIR4661-201ENST00000582720 75 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 ZNF680P1-201ENST00000436625 1469 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 AC005832.2-201ENST00000538921 1430 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 AC092634.2-201ENST00000428146 1010 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 GTF2IP13-201ENST00000438487 386 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 PGBD4P5-201ENST00000445958 426 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 MTND4P19-201ENST00000446659 478 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.13□□□□□ -2.39
COL6A3P12111 AP002371.1-201ENST00000463604 433 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 COX6CP6-201ENST00000490840 228 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
COL6A3P12111 SNORA4.4-201ENST00000515921 135 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC0.13□□□□□ -2.39
COL6A3P12111 AC005832.3-201ENST00000537929 631 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC0.13□□□□□ -2.39
COL6A3P12111 AL590229.1-201ENST00000603497 542 ntBASIC0.13□□□□□ -2.39
COL6A3P12111 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC0.13□□□□□ -2.39
COL6A3P12111 RNU1-36P-201ENST00000365130 165 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 RNA5SP240-201ENST00000365355 128 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 Y_RNA.437-201ENST00000384113 113 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 RNU6-748P-201ENST00000384648 107 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 MIR124-2-201ENST00000385081 109 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 RNU2-7P-201ENST00000410794 178 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.12□□□□□ -2.39
COL6A3P12111 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC0.12□□□□□ -2.39
COL6A3P12111 ZNF863P-201ENST00000426746 417 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 HMGB1P35-201ENST00000503360 598 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 AC111193.1-201ENST00000504097 155 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC0.12□□□□□ -2.39
COL6A3P12111 SCARNA16.2-201ENST00000516520 172 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 HMGN2P15-201ENST00000585707 270 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 AC091805.2-201ENST00000603848 235 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 AC090517.2-201ENST00000614966 680 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.12□□□□□ -2.39
COL6A3P12111 RNU6-1082P-201ENST00000364574 107 ntBASIC0.12□□□□□ -2.39
COL6A3P12111 RNU6-1083P-201ENST00000384022 107 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms