Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
HMGB1P09429 Y_RNA.255-201ENST00000364581 97 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 RNU6-336P-201ENST00000364891 107 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 Y_RNA.399-201ENST00000383955 105 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.47□□□□□ -1.85
HMGB1P09429 AC243964.1-201ENST00000441814 261 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 AP004217.1-201ENST00000480579 346 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 AK3P2-201ENST00000507976 429 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.47□□□□□ -1.85
HMGB1P09429 AC034114.1-201ENST00000520293 285 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.47□□□□□ -1.85
HMGB1P09429 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.47□□□□□ -1.85
HMGB1P09429 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 AP001596.2-201ENST00000608410 312 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 AL158209.2-201ENST00000619266 216 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 MIR8057-201ENST00000620957 69 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 MIR6863-201ENST00000636112 90 ntBASIC3.47□□□□□ -1.85
HMGB1P09429 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.47□□□□□ -1.85
HMGB1P09429 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
HMGB1P09429 MIR422A-201ENST00000362286 90 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 RNU6-546P-201ENST00000383991 107 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 MIR29B2-201ENST00000385055 81 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 AL590556.1-201ENST00000423231 483 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.46□□□□□ -1.86
HMGB1P09429 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.46□□□□□ -1.86
HMGB1P09429 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.46□□□□□ -1.86
HMGB1P09429 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.46□□□□□ -1.86
HMGB1P09429 RPS3P1-201ENST00000456781 192 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.46□□□□□ -1.86
HMGB1P09429 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.46□□□□□ -1.86
HMGB1P09429 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.46□□□□□ -1.86
HMGB1P09429 RNU6-85P-201ENST00000605989 107 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 AC090115.4-201ENST00000609970 188 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 AC096577.2-201ENST00000611455 153 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 Z99129.1-201ENST00000612510 255 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 MIR6895-201ENST00000613497 78 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 MIR3651-201ENST00000630427 90 ntBASIC3.46□□□□□ -1.86
HMGB1P09429 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
HMGB1P09429 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HMGB1P09429 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HMGB1P09429 RNU6-827P-201ENST00000365553 106 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.45□□□□□ -1.86
HMGB1P09429 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 AL138885.1-201ENST00000405921 675 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 SNORA11-201ENST00000408789 128 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.45□□□□□ -1.86
HMGB1P09429 USP9YP14-201ENST00000430663 563 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 RPL7P54-201ENST00000438336 674 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 Z83846.1-201ENST00000446798 265 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.45□□□□□ -1.86
HMGB1P09429 RNU6-965P-201ENST00000516721 96 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.45□□□□□ -1.86
HMGB1P09429 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.45□□□□□ -1.86
HMGB1P09429 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.45□□□□□ -1.86
HMGB1P09429 AC103996.1-201ENST00000555468 102 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.45□□□□□ -1.86
HMGB1P09429 MTCO3P23-201ENST00000561363 289 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 MYL12BP1-201ENST00000569826 507 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 AC026271.5-201ENST00000577873 130 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 MIR3941-201ENST00000582572 103 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 AC104073.3-201ENST00000610942 955 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HMGB1P09429 MTND5P26-201ENST00000426018 1752 ntBASIC3.45□□□□□ -1.86
HMGB1P09429 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HMGB1P09429 RNU1-35P-201ENST00000362782 153 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 RNU6-944P-201ENST00000364023 107 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 SNORD46.1-201ENST00000364139 104 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 RNU6-259P-201ENST00000383999 107 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 RNU6-692P-201ENST00000384496 107 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
HMGB1P09429 RNA5SP219-201ENST00000390940 113 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 RNU2-66P-201ENST00000410650 161 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 HMGB3P2-201ENST00000411913 584 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 AL451074.5-201ENST00000415894 435 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.44□□□□□ -1.86
HMGB1P09429 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.44□□□□□ -1.86
HMGB1P09429 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.44□□□□□ -1.86
HMGB1P09429 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.44□□□□□ -1.86
HMGB1P09429 AC107032.1-201ENST00000485945 480 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 AC083906.5-201ENST00000503722 328 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 AC093534.1-201ENST00000504977 132 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.44□□□□□ -1.86
HMGB1P09429 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.44□□□□□ -1.86
HMGB1P09429 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.44□□□□□ -1.86
HMGB1P09429 AC233702.2-202ENST00000562547 291 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 MIR5195-201ENST00000583555 115 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
HMGB1P09429 AC245008.1-201ENST00000608123 476 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 AC069234.5-201ENST00000611056 416 ntBASIC3.44□□□□□ -1.86
HMGB1P09429 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
HMGB1P09429 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
HMGB1P09429 SNORD115-3-201ENST00000363100 82 ntBASIC3.43□□□□□ -1.86
HMGB1P09429 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.43□□□□□ -1.86
HMGB1P09429 VN1R108P-201ENST00000431580 830 ntBASIC3.43□□□□□ -1.86
HMGB1P09429 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.43□□□□□ -1.86
HMGB1P09429 MTND1P29-201ENST00000448112 647 ntBASIC3.43□□□□□ -1.86
HMGB1P09429 MTCO2P18-201ENST00000457151 658 ntBASIC3.43□□□□□ -1.86
HMGB1P09429 RNA5SP401-201ENST00000515920 127 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms