Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
HOXD4P09016 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXD4P09016 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.4□□□□□ -2.02
HOXD4P09016 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
HOXD4P09016 Y_RNA.160-201ENST00000363677 92 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 RNU6-715P-201ENST00000365204 103 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 RNU6-332P-201ENST00000391193 108 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXD4P09016 Y_RNA.615-201ENST00000410769 117 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 RNU6-373P-201ENST00000411247 98 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AC138393.2-201ENST00000414742 246 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXD4P09016 AL669831.1-202ENST00000428504 417 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 GPM6BP2-201ENST00000432046 144 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AL591704.1-201ENST00000432574 275 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 ERLEC1P1-201ENST00000433806 578 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AL121601.2-201ENST00000438019 707 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 GTF2IP13-201ENST00000438487 386 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXD4P09016 GPM6BP1-201ENST00000446387 144 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 MRPL50P4-201ENST00000446432 475 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 RPS3P1-201ENST00000456781 192 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 RPS27P26-201ENST00000494583 239 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 MTCO2P30-201ENST00000503662 364 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXD4P09016 AC025465.4-201ENST00000513422 638 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 RNU1-41P-201ENST00000516161 162 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 RNU1-48P-201ENST00000516400 162 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 SNORA20.3-201ENST00000516880 132 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AP003122.3-201ENST00000526316 255 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.4□□□□□ -2.03
HOXD4P09016 AC084851.1-201ENST00000529105 249 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 BNIP3P6-201ENST00000549284 499 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AL121579.1-201ENST00000555129 305 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXD4P09016 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXD4P09016 AC060766.3-201ENST00000591442 263 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 BNIP3P10-201ENST00000605360 577 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AL137847.3-201ENST00000611521 109 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AL355073.2-201ENST00000612106 557 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AC090617.10-201ENST00000624308 134 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AP003400.5-201ENST00000624827 617 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AC100810.6-201ENST00000638068 285 ntBASIC2.4□□□□□ -2.03
HOXD4P09016 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
HOXD4P09016 MTND4P35-201ENST00000604257 1375 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD4P09016 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXD4P09016 Y_RNA.157-201ENST00000363638 102 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 RNU6-522P-201ENST00000364497 107 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 Y_RNA.378-201ENST00000365652 113 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD4P09016 SNORD21-201ENST00000383953 95 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 SNORA80E-201ENST00000384744 137 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 MIR578-201ENST00000384828 96 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 MIR767-201ENST00000390228 109 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 SNORA16.2-201ENST00000390991 127 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 AL512633.1-201ENST00000399931 655 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 Y_RNA.604-201ENST00000410574 102 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD4P09016 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD4P09016 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD4P09016 TRBV1-201ENST00000476502 284 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD4P09016 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXD4P09016 AC008413.1-201ENST00000511864 177 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 Y_RNA.665-201ENST00000516177 98 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 RNA5SP148-201ENST00000516527 94 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 RNA5SP165-201ENST00000517142 115 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 RNU6-1315P-201ENST00000517187 99 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 AC023050.3-201ENST00000541142 333 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD4P09016 AC004805.2-201ENST00000605382 482 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.39□□□□□ -2.03
HOXD4P09016 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD4P09016 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD4P09016 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD4P09016 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD4P09016 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD4P09016 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD4P09016 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.38□□□□□ -2.03
HOXD4P09016 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXD4P09016 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD4P09016 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD4P09016 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD4P09016 SNORA72.1-201ENST00000363485 129 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 Y_RNA.167-201ENST00000363735 109 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD4P09016 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD4P09016 XGY1-201ENST00000381172 446 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 SNORA75B-201ENST00000384053 137 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 RNU6-140P-201ENST00000384566 108 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 SNORA67.4-201ENST00000384688 142 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 MIR301A-201ENST00000385261 86 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 SNORD70.1-201ENST00000391007 85 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 AL162578.1-201ENST00000406202 378 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 RNU6-1148P-201ENST00000410992 104 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXD4P09016 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.38□□□□□ -2.03
HOXD4P09016 AL360271.2-201ENST00000447710 161 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 132.5 ms