Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RNU2-63P-201ENST00000410792 194 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 Y_RNA.623-201ENST00000411128 95 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AL031779.1-201ENST00000415663 330 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC1.36□□□□□ -2.19
CPSF4O95639 AC007098.1-201ENST00000420122 367 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AL365338.1-201ENST00000422282 858 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AL160275.3-201ENST00000423876 471 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 VN1R108P-201ENST00000431580 830 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 RPL7P34-201ENST00000433316 712 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 RPS24P1-201ENST00000438550 371 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 snoU13.15-201ENST00000459407 104 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 RPL30P6-201ENST00000475925 342 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.36□□□□□ -2.19
CPSF4O95639 AC112206.3-201ENST00000514578 389 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.36□□□□□ -2.19
CPSF4O95639 Y_RNA.672-201ENST00000516289 104 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 RNU6-1220P-201ENST00000517126 108 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 RNU6-232P-201ENST00000517144 64 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 SNORA31.25-201ENST00000517242 134 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 RNU2-19P-201ENST00000517288 84 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
CPSF4O95639 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.36□□□□□ -2.19
CPSF4O95639 ADI1P3-201ENST00000549509 470 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AC008015.1-201ENST00000555505 465 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.36□□□□□ -2.19
CPSF4O95639 MIR548AB-201ENST00000584917 84 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
CPSF4O95639 AC009977.1-201ENST00000586015 570 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AC012065.4-201ENST00000602445 679 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AC068276.1-201ENST00000605793 379 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AC018638.7-201ENST00000605836 1114 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 RNU6-91P-201ENST00000607774 107 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 MIR5739-201ENST00000619803 80 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 AC092656.1-203ENST00000624134 423 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.36□□□□□ -2.19
CPSF4O95639 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.36□□□□□ -2.19
CPSF4O95639 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CPSF4O95639 AP006437.1-201ENST00000641440 3685 ntBASIC1.36□□□□□ -2.19
CPSF4O95639 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CPSF4O95639 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
CPSF4O95639 MIR412-201ENST00000362142 91 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 Y_RNA.22-201ENST00000362492 102 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 RNU6-60P-201ENST00000364792 103 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 SNORA24.1-201ENST00000384401 135 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 RPL23AP32-201ENST00000395315 459 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 RPS3AP36-201ENST00000398190 775 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 RNU2-39P-201ENST00000410604 198 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 SNORD56-201ENST00000413522 71 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 Z99497.1-201ENST00000421282 135 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 MED13P1-201ENST00000428342 171 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.35□□□□□ -2.19
CPSF4O95639 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.35□□□□□ -2.19
CPSF4O95639 RAP1BP2-201ENST00000478270 544 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 RBBP4P6-201ENST00000508098 202 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 FABP5P5-201ENST00000515537 406 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 RNU6-759P-201ENST00000516740 103 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 RNU2-46P-201ENST00000517038 113 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 AC022616.3-201ENST00000523940 148 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.35□□□□□ -2.19
CPSF4O95639 MTCYBP33-201ENST00000575007 1130 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 AL109918.3-201ENST00000603072 338 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 AL355297.2-201ENST00000604792 129 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 AC092354.1-201ENST00000606057 376 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 AC091304.9-201ENST00000612091 226 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 U4atac.1-201ENST00000618345 95 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 AC079248.2-201ENST00000623779 326 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 RBBP8P1-201ENST00000449447 1844 ntBASIC1.35□□□□□ -2.19
CPSF4O95639 RNU6-942P-201ENST00000363002 107 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 RNU6-553P-201ENST00000364047 96 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 SNORD14B-201ENST00000364533 90 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
CPSF4O95639 RNU6-641P-201ENST00000384006 107 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 RNU6-72P-201ENST00000384285 79 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 RNU6-997P-201ENST00000384725 107 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 MIR578-201ENST00000384828 96 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 MIR10A-201ENST00000385043 110 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 AL031577.2-201ENST00000404133 280 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 Y_RNA.598-201ENST00000410480 95 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.34□□□□□ -2.19
CPSF4O95639 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.34□□□□□ -2.19
CPSF4O95639 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.34□□□□□ -2.19
CPSF4O95639 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.34□□□□□ -2.19
CPSF4O95639 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.34□□□□□ -2.19
CPSF4O95639 MTND4P20-201ENST00000424125 869 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 AIMP1P2-201ENST00000425294 312 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.34□□□□□ -2.19
CPSF4O95639 AL627311.1-201ENST00000431514 115 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 AC104850.1-201ENST00000435940 476 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.34□□□□□ -2.19
CPSF4O95639 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC1.34□□□□□ -2.19
CPSF4O95639 MTND1P30-201ENST00000441241 901 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.34□□□□□ -2.19
CPSF4O95639 MED28P2-201ENST00000475771 317 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 CKS1BP2-201ENST00000497342 240 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 MTCYBP35-201ENST00000503630 1137 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 AC117522.1-201ENST00000509821 380 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 SNORA31.24-201ENST00000517232 57 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 AC106038.2-201ENST00000520706 568 ntBASIC1.34□□□□□ -2.19
CPSF4O95639 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms