Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.39□□□□□ -1.87
VPS4BO75351 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS4BO75351 AL049781.1-201ENST00000623195 3585 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS4BO75351 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
VPS4BO75351 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS4BO75351 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS4BO75351 Y_RNA.5-201ENST00000362334 102 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 Y_RNA.202-201ENST00000364083 110 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 RNU6-890P-201ENST00000384121 107 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 MIR490-201ENST00000384865 128 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 RNU6-174P-201ENST00000410406 106 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS4BO75351 USMG5P1-201ENST00000425964 177 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS4BO75351 PCMTD1P1-201ENST00000455560 355 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 RNA5SP310-201ENST00000459084 116 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS4BO75351 SMURF2P1-201ENST00000514992 481 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 RNU6-976P-201ENST00000516086 111 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS4BO75351 AC007458.1-201ENST00000542812 373 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 MIR4782-201ENST00000577987 79 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 AC008121.1-201ENST00000603244 268 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS4BO75351 SCARNA4-202ENST00000625402 129 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS4BO75351 SNORA50A-202ENST00000629536 136 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 U4.7-201ENST00000638126 106 ntBASIC3.38□□□□□ -1.87
VPS4BO75351 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS4BO75351 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
VPS4BO75351 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4BO75351 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4BO75351 MTND5P30-201ENST00000452896 1731 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4BO75351 Y_RNA.31-201ENST00000362574 102 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 Y_RNA.473-201ENST00000384333 102 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 SNORA41-201ENST00000384675 132 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 RNU6-325P-201ENST00000411132 105 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS4BO75351 NDUFS5P4-201ENST00000412983 318 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4BO75351 HIGD1AP2-201ENST00000446367 280 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS4BO75351 HMGN1P18-201ENST00000457642 277 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS4BO75351 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 LINC00933-203ENST00000559812 219 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS4BO75351 HSPE1P7-201ENST00000604681 321 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 AC005046.1-201ENST00000608515 625 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 U6.99-201ENST00000637524 83 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4BO75351 AC119674.1-207ENST00000641355 633 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS4BO75351 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS4BO75351 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
VPS4BO75351 FAM35BP-202ENST00000497389 3337 ntBASIC3.37□□□□□ -1.87
VPS4BO75351 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS4BO75351 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS4BO75351 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS4BO75351 Y_RNA.28-201ENST00000362554 111 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 RNU6-1059P-201ENST00000363752 98 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 Y_RNA.216-201ENST00000364205 93 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 SNORA33.2-201ENST00000365413 134 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 RNU6-805P-201ENST00000365643 106 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 Y_RNA.422-201ENST00000384054 114 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 Y_RNA.463-201ENST00000384271 102 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 RPS4XP3-201ENST00000398541 413 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 RPS29P13-201ENST00000402041 169 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS4BO75351 AC245291.1-201ENST00000419501 328 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 HMGN2P30-201ENST00000423237 256 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 AC093151.1-201ENST00000427711 313 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 TOMM20P4-201ENST00000427861 435 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS4BO75351 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS4BO75351 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS4BO75351 RN7SL442P-201ENST00000473804 320 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS4BO75351 AC006445.2-201ENST00000510061 472 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 AC010265.1-201ENST00000513509 211 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 Y_RNA.687-201ENST00000516558 91 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 RNA5SP384-201ENST00000516615 116 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 RNU6-928P-201ENST00000516876 104 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 MIR2276-201ENST00000516886 89 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 AC093331.1-201ENST00000521474 169 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.36□□□□□ -1.87
VPS4BO75351 MIR3609-201ENST00000582661 80 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 AC005899.2-201ENST00000584353 90 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS4BO75351 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS4BO75351 AC099778.2-201ENST00000610904 211 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 MIR6134-201ENST00000617606 109 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 AC091925.1-201ENST00000623204 462 ntBASIC3.36□□□□□ -1.87
VPS4BO75351 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS4BO75351 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS4BO75351 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS4BO75351 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS4BO75351 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 182.4 ms