Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC006011.1-201ENST00000442758 349 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXA3O43365 HMGN2P10-201ENST00000448085 265 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 SNRPGP5-201ENST00000456003 220 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA3O43365 RPL39P38-201ENST00000467018 153 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AC006445.2-201ENST00000510061 472 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AC025465.3-201ENST00000510570 311 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AC011602.1-201ENST00000546484 331 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 SYF2P1-201ENST00000550658 413 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AC021739.1-201ENST00000559631 174 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA3O43365 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXA3O43365 MIR5685-201ENST00000579080 79 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
HOXA3O43365 AL356157.2-201ENST00000605122 111 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA3O43365 RMST_6.1-201ENST00000611980 203 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
HOXA3O43365 U6.92-201ENST00000636464 89 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA3O43365 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA3O43365 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA3O43365 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA3O43365 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA3O43365 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.3□□□□□ -1.88
HOXA3O43365 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA3O43365 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA3O43365 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXA3O43365 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA3O43365 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
HOXA3O43365 SNORA60-201ENST00000362396 134 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 RNU6-212P-201ENST00000362642 104 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 Y_RNA.477-201ENST00000384352 108 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 Y_RNA.562-201ENST00000384695 113 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 MIR544A-201ENST00000384855 91 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 MIR32-201ENST00000384965 70 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 AL591034.1-201ENST00000407447 340 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 RN7SKP53-201ENST00000411337 315 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 AC091286.1-201ENST00000431233 461 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXA3O43365 HLA-N-201ENST00000437516 135 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA3O43365 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXA3O43365 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA3O43365 ABCF2P2-201ENST00000450549 296 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 RPS26P21-201ENST00000475397 348 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 Y_RNA.713-201ENST00000517013 96 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 AC022868.1-201ENST00000517767 391 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA3O43365 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.29□□□□□ -1.88
HOXA3O43365 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA3O43365 CYP4A43P-201ENST00000568156 121 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 MIR3609-201ENST00000582661 80 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA3O43365 AC073410.2-201ENST00000603240 332 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 AC025946.2-201ENST00000603398 234 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 AC019159.1-201ENST00000605094 187 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 AC011373.1-201ENST00000607270 237 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 MIR7151-201ENST00000617477 60 ntBASIC3.29□□□□□ -1.88
HOXA3O43365 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA3O43365 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA3O43365 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXA3O43365 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
HOXA3O43365 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA3O43365 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA3O43365 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
HOXA3O43365 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA3O43365 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA3O43365 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA3O43365 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA3O43365 RNU6-222P-201ENST00000362438 107 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 Y_RNA.84-201ENST00000363011 104 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 SNORA20.1-201ENST00000364790 130 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 RNU1-140P-201ENST00000365040 165 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 RNU6-142P-201ENST00000384019 107 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 SNORA29-201ENST00000384183 140 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 Y_RNA.518-201ENST00000384552 113 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 MIR215-201ENST00000384858 110 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 SNORD115-46-201ENST00000390982 71 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 RNA5SP171-201ENST00000391071 115 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 RNU2-37P-201ENST00000410695 177 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 RN7SKP167-201ENST00000411047 285 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA3O43365 RPL23AP95-201ENST00000426806 265 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 AC011742.1-201ENST00000431448 434 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA3O43365 MTND4LP30-201ENST00000454092 297 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA3O43365 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.28□□□□□ -1.88
HOXA3O43365 AF186996.7-201ENST00000492781 209 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 RPL29P14-201ENST00000495837 428 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 RNU6-1023P-201ENST00000516137 106 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 SNORA31.23-201ENST00000517219 133 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 AC093023.1-201ENST00000547375 507 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.28□□□□□ -1.88
HOXA3O43365 AL391261.3-201ENST00000557194 520 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA3O43365 AC012433.1-201ENST00000588916 398 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms