Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL670379.4-201ENST00000605279 254 ntBASIC2.06□□□□□ -2.08
MSH4O15457 AC068276.1-201ENST00000605793 379 ntBASIC2.06□□□□□ -2.08
MSH4O15457 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.06□□□□□ -2.08
MSH4O15457 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.06□□□□□ -2.08
MSH4O15457 DUXAP9-208ENST00000622815 614 ntBASIC2.06□□□□□ -2.08
MSH4O15457 AC120349.3-201ENST00000624377 529 ntBASIC2.06□□□□□ -2.08
MSH4O15457 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
MSH4O15457 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
MSH4O15457 SNORD14B-201ENST00000364533 90 ntBASIC2.05□□□□□ -2.08
MSH4O15457 RNU6-72P-201ENST00000384285 79 ntBASIC2.05□□□□□ -2.08
MSH4O15457 SNORA51.11-201ENST00000384442 131 ntBASIC2.05□□□□□ -2.08
MSH4O15457 MIR578-201ENST00000384828 96 ntBASIC2.05□□□□□ -2.08
MSH4O15457 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
MSH4O15457 MIR1294-201ENST00000408503 142 ntBASIC2.05□□□□□ -2.08
MSH4O15457 RNU2-63P-201ENST00000410792 194 ntBASIC2.05□□□□□ -2.08
MSH4O15457 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.05□□□□□ -2.08
MSH4O15457 EIF4EP4-201ENST00000424916 578 ntBASIC2.05□□□□□ -2.08
MSH4O15457 RPS6P15-201ENST00000431996 751 ntBASIC2.05□□□□□ -2.08
MSH4O15457 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.05□□□□□ -2.08
MSH4O15457 RPL7P54-201ENST00000438336 674 ntBASIC2.05□□□□□ -2.08
MSH4O15457 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.05□□□□□ -2.08
MSH4O15457 AL022238.1-201ENST00000442557 355 ntBASIC2.05□□□□□ -2.08
MSH4O15457 NDUFB1P2-201ENST00000449477 176 ntBASIC2.05□□□□□ -2.08
MSH4O15457 SNRPGP9-201ENST00000456025 225 ntBASIC2.05□□□□□ -2.08
MSH4O15457 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.05□□□□□ -2.08
MSH4O15457 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.05□□□□□ -2.08
MSH4O15457 CKS1BP2-201ENST00000497342 240 ntBASIC2.05□□□□□ -2.08
MSH4O15457 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.05□□□□□ -2.08
MSH4O15457 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.05□□□□□ -2.08
MSH4O15457 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.05□□□□□ -2.08
MSH4O15457 AC137800.2-201ENST00000574375 120 ntBASIC2.05□□□□□ -2.08
MSH4O15457 AL138889.2-201ENST00000603883 242 ntBASIC2.05□□□□□ -2.08
MSH4O15457 AP001506.1-201ENST00000615444 211 ntBASIC2.05□□□□□ -2.08
MSH4O15457 AC009233.1-201ENST00000616477 371 ntBASIC2.05□□□□□ -2.08
MSH4O15457 AP003400.5-201ENST00000624827 617 ntBASIC2.05□□□□□ -2.08
MSH4O15457 MIR203B-201ENST00000636080 86 ntBASIC2.05□□□□□ -2.08
MSH4O15457 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.05□□□□□ -2.08
MSH4O15457 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.05□□□□□ -2.08
MSH4O15457 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
MSH4O15457 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
MSH4O15457 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
MSH4O15457 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
MSH4O15457 RNU1-72P-201ENST00000362976 153 ntBASIC2.04□□□□□ -2.08
MSH4O15457 SNORA16.1-201ENST00000364597 132 ntBASIC2.04□□□□□ -2.08
MSH4O15457 RNY3P10-201ENST00000384764 102 ntBASIC2.04□□□□□ -2.08
MSH4O15457 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
MSH4O15457 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH4O15457 AC009961.2-201ENST00000435771 251 ntBASIC2.04□□□□□ -2.08
MSH4O15457 MTND1P26-201ENST00000440488 538 ntBASIC2.04□□□□□ -2.08
MSH4O15457 GAPDHP17-201ENST00000449858 1001 ntBASIC2.04□□□□□ -2.08
MSH4O15457 AC012308.1-201ENST00000451232 178 ntBASIC2.04□□□□□ -2.08
MSH4O15457 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH4O15457 MTND4P1-201ENST00000457501 1466 ntBASIC2.04□□□□□ -2.08
MSH4O15457 RPL7P43-201ENST00000478876 753 ntBASIC2.04□□□□□ -2.08
MSH4O15457 AC068781.1-201ENST00000488231 618 ntBASIC2.04□□□□□ -2.08
MSH4O15457 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.04□□□□□ -2.08
MSH4O15457 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.04□□□□□ -2.08
MSH4O15457 AC090572.1-201ENST00000519251 160 ntBASIC2.04□□□□□ -2.08
MSH4O15457 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.04□□□□□ -2.08
MSH4O15457 AP004607.1-201ENST00000524456 203 ntBASIC2.04□□□□□ -2.08
MSH4O15457 DUXAP5-201ENST00000529668 529 ntBASIC2.04□□□□□ -2.08
MSH4O15457 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.04□□□□□ -2.08
MSH4O15457 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH4O15457 BNIP3P30-201ENST00000601184 574 ntBASIC2.04□□□□□ -2.08
MSH4O15457 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
MSH4O15457 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.04□□□□□ -2.08
MSH4O15457 AC096772.1-201ENST00000609146 564 ntBASIC2.04□□□□□ -2.08
MSH4O15457 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
MSH4O15457 MIR5739-201ENST00000619803 80 ntBASIC2.04□□□□□ -2.08
MSH4O15457 AC138649.3-201ENST00000622154 254 ntBASIC2.04□□□□□ -2.08
MSH4O15457 AL359740.1-201ENST00000624340 592 ntBASIC2.04□□□□□ -2.08
MSH4O15457 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.04□□□□□ -2.08
MSH4O15457 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
MSH4O15457 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
MSH4O15457 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
MSH4O15457 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.03□□□□□ -2.08
MSH4O15457 RBBP8P1-201ENST00000449447 1844 ntBASIC2.03□□□□□ -2.08
MSH4O15457 FARSBP1-201ENST00000435808 1778 ntBASIC2.03□□□□□ -2.08
MSH4O15457 AL596028.1-201ENST00000326971 197 ntBASIC2.03□□□□□ -2.08
MSH4O15457 FGF7P2-201ENST00000332473 296 ntBASIC2.03□□□□□ -2.08
MSH4O15457 SNORA3A-201ENST00000364113 130 ntBASIC2.03□□□□□ -2.08
MSH4O15457 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.03□□□□□ -2.08
MSH4O15457 RNU6-387P-201ENST00000411331 105 ntBASIC2.03□□□□□ -2.08
MSH4O15457 EEF1A1P40-201ENST00000412883 573 ntBASIC2.03□□□□□ -2.08
MSH4O15457 AC138623.1-201ENST00000418060 216 ntBASIC2.03□□□□□ -2.08
MSH4O15457 MTND2P18-201ENST00000419962 1030 ntBASIC2.03□□□□□ -2.08
MSH4O15457 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.03□□□□□ -2.08
MSH4O15457 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH4O15457 AL360271.2-201ENST00000447710 161 ntBASIC2.03□□□□□ -2.08
MSH4O15457 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH4O15457 HMGN2P23-201ENST00000456759 269 ntBASIC2.03□□□□□ -2.08
MSH4O15457 MTND3P7-201ENST00000474435 343 ntBASIC2.03□□□□□ -2.08
MSH4O15457 HMGB1P30-201ENST00000492455 606 ntBASIC2.03□□□□□ -2.08
MSH4O15457 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH4O15457 RNU6-410P-201ENST00000517006 107 ntBASIC2.03□□□□□ -2.08
MSH4O15457 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH4O15457 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH4O15457 MTCYBP33-201ENST00000575007 1130 ntBASIC2.03□□□□□ -2.08
MSH4O15457 MIR3935-201ENST00000583472 104 ntBASIC2.03□□□□□ -2.08
MSH4O15457 AC093788.1-201ENST00000609356 927 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms