Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RNU6-78P-201ENST00000362897 107 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 RNU6-527P-201ENST00000363425 104 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 SNORD46.1-201ENST00000364139 104 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 RNU6-827P-201ENST00000365553 106 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 MIR1302-11-201ENST00000408051 138 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 SNORA11.1-201ENST00000408133 129 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 MIR1302-9-201ENST00000408365 138 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 MIR1302-10-201ENST00000408734 138 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.35□□□□□ -1.87
FOXN3O00409 AL359672.1-201ENST00000442302 409 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 MRPL42P6-201ENST00000486397 371 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 RPL23AP49-201ENST00000492925 468 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXN3O00409 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXN3O00409 RNU6-864P-201ENST00000516256 108 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 Y_RNA.682-201ENST00000516457 100 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 AP000889.2-201ENST00000532684 490 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXN3O00409 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.35□□□□□ -1.87
FOXN3O00409 MIR3672-201ENST00000584290 82 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
FOXN3O00409 RPL23AP78-201ENST00000599928 470 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 AC078795.3-201ENST00000602913 472 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 AL627309.6-201ENST00000606857 840 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 MIR1302-2-201ENST00000607096 138 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 AC010378.1-201ENST00000619270 362 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 AC018692.3-201ENST00000623929 123 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 MTND4LP32-201ENST00000636111 270 ntBASIC3.35□□□□□ -1.87
FOXN3O00409 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXN3O00409 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXN3O00409 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
FOXN3O00409 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
FOXN3O00409 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXN3O00409 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
FOXN3O00409 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
FOXN3O00409 SNORA63.1-201ENST00000362493 131 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 Y_RNA.212-201ENST00000364177 102 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 RNA5SP267-201ENST00000364893 126 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 Y_RNA.333-201ENST00000365274 102 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
FOXN3O00409 Y_RNA.384-201ENST00000383909 102 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 SNORA7.4-201ENST00000384249 137 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 SNORD116-20-201ENST00000384529 92 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 RNU6-19P-201ENST00000384718 107 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 AL133475.1-201ENST00000404414 305 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 RNU4-14P-201ENST00000410858 122 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 SNORD56-201ENST00000413522 71 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXN3O00409 AL096701.2-201ENST00000416920 238 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXN3O00409 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXN3O00409 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXN3O00409 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
FOXN3O00409 AL365496.1-201ENST00000426885 215 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXN3O00409 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXN3O00409 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
FOXN3O00409 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXN3O00409 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXN3O00409 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXN3O00409 RNU6-377P-201ENST00000515965 102 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 Y_RNA.691-201ENST00000516611 103 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 RNU6-1088P-201ENST00000516850 104 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 ACA59.2-201ENST00000517061 156 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXN3O00409 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXN3O00409 AC026371.1-201ENST00000551867 419 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 AC103996.1-201ENST00000555468 102 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 AC138761.3-201ENST00000579993 334 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 MIR3944-201ENST00000581277 108 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 UBL5P2-201ENST00000583788 219 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXN3O00409 AC005034.5-201ENST00000604219 466 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 ELOCP5-201ENST00000604924 333 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 uc_338.15-201ENST00000615470 191 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 MIR7112-201ENST00000616126 65 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 ATP5A1P2-202ENST00000616464 443 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 AL359757.2-201ENST00000624309 274 ntBASIC3.34□□□□□ -1.87
FOXN3O00409 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
FOXN3O00409 CDC27P3-201ENST00000635418 1910 ntBASIC3.34□□□□□ -1.88
FOXN3O00409 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.34□□□□□ -1.88
FOXN3O00409 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXN3O00409 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXN3O00409 RNU6-428P-201ENST00000362942 107 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 Y_RNA.259-201ENST00000364619 101 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
FOXN3O00409 SNORA46-201ENST00000384762 135 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 RNVU1-14-201ENST00000384770 164 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 MIR147B-201ENST00000390185 80 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 RPL21P3-201ENST00000395517 478 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 RN7SKP220-201ENST00000410611 288 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 RNA5SP120-201ENST00000410900 112 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 AF228730.4-201ENST00000421457 183 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 AL590632.1-201ENST00000424289 371 ntBASIC3.33□□□□□ -1.88
FOXN3O00409 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXN3O00409 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.33□□□□□ -1.88
FOXN3O00409 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
FOXN3O00409 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXN3O00409 AC146507.2-201ENST00000460608 476 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms