Protein–RNA interactions for Protein: Q9ER88

Dap3, 28S ribosomal protein S29, mitochondrial, mousemouse

Known RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Dap3Q9ER88 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Dap3Q9ER88 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Dap3Q9ER88 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Dap3Q9ER88 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC14.89□□□□□ -0.03
Dap3Q9ER88 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC14.89□□□□□ -0.03
Dap3Q9ER88 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Dap3Q9ER88 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Gm20760-201ENSMUST00000179197 648 ntBASIC14.88□□□□□ -0.03
Dap3Q9ER88 Gm10698-201ENSMUST00000182663 604 ntBASIC14.88□□□□□ -0.03
Dap3Q9ER88 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Dap3Q9ER88 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Dap3Q9ER88 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC14.86□□□□□ -0.03
Dap3Q9ER88 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 App-207ENSMUST00000227737 2827 ntBASIC14.86□□□□□ -0.03
Dap3Q9ER88 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
Dap3Q9ER88 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Dap3Q9ER88 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC14.85□□□□□ -0.03
Dap3Q9ER88 CT025689.6-201ENSMUST00000224991 1104 ntBASIC14.85□□□□□ -0.03
Dap3Q9ER88 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms