Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RTRAFQ9CQE8 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RTRAFQ9CQE8 Gm6365-201ENSMUST00000054711 744 ntBASIC13.21□□□□□ -0.29
RTRAFQ9CQE8 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RTRAFQ9CQE8 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RTRAFQ9CQE8 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RTRAFQ9CQE8 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RTRAFQ9CQE8 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RTRAFQ9CQE8 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RTRAFQ9CQE8 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
RTRAFQ9CQE8 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Gm7291-201ENSMUST00000199147 382 ntBASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC13.2□□□□□ -0.3
RTRAFQ9CQE8 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Mir6349-201ENSMUST00000184059 97 ntBASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Gm44549-201ENSMUST00000208351 577 ntBASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RTRAFQ9CQE8 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Asic1-205ENSMUST00000228185 1818 ntBASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Gm6576-201ENSMUST00000169678 883 ntBASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
RTRAFQ9CQE8 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms