Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC20.94■□□□□ 0.94
Trim28Q62318 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim28Q62318 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Gm11764-201ENSMUST00000120221 623 ntBASIC20.93■□□□□ 0.94
Trim28Q62318 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Trim28Q62318 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC20.93■□□□□ 0.94
Trim28Q62318 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC20.93■□□□□ 0.94
Trim28Q62318 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Trim28Q62318 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim28Q62318 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim28Q62318 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim28Q62318 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim28Q62318 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trim28Q62318 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim28Q62318 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trim28Q62318 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC20.92■□□□□ 0.94
Trim28Q62318 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim28Q62318 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Trim28Q62318 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC20.92■□□□□ 0.94
Trim28Q62318 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trim28Q62318 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim28Q62318 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim28Q62318 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim28Q62318 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim28Q62318 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim28Q62318 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim28Q62318 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC20.91■□□□□ 0.94
Trim28Q62318 Gm11779-201ENSMUST00000118541 368 ntBASIC20.91■□□□□ 0.94
Trim28Q62318 Gm15358-201ENSMUST00000119249 520 ntBASIC20.91■□□□□ 0.94
Trim28Q62318 Gm8344-201ENSMUST00000119813 856 ntBASIC20.91■□□□□ 0.94
Trim28Q62318 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC20.91■□□□□ 0.94
Trim28Q62318 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim28Q62318 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Trim28Q62318 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC20.91■□□□□ 0.94
Trim28Q62318 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim28Q62318 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim28Q62318 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim28Q62318 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim28Q62318 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim28Q62318 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Trim28Q62318 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Trim28Q62318 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC20.9■□□□□ 0.94
Trim28Q62318 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim28Q62318 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC20.9■□□□□ 0.94
Trim28Q62318 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Trim28Q62318 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Trim28Q62318 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim28Q62318 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim28Q62318 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Trim28Q62318 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
Trim28Q62318 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim28Q62318 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trim28Q62318 Gm6184-201ENSMUST00000120403 1261 ntBASIC20.89■□□□□ 0.93
Trim28Q62318 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC20.89■□□□□ 0.93
Trim28Q62318 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim28Q62318 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Trim28Q62318 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim28Q62318 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim28Q62318 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trim28Q62318 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim28Q62318 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim28Q62318 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim28Q62318 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Trim28Q62318 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim28Q62318 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim28Q62318 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim28Q62318 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim28Q62318 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC20.88■□□□□ 0.93
Trim28Q62318 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC20.88■□□□□ 0.93
Trim28Q62318 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC20.88■□□□□ 0.93
Trim28Q62318 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms