Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC16.48■□□□□ 0.23
Sox1P53783 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC16.48■□□□□ 0.23
Sox1P53783 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Sox1P53783 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.48■□□□□ 0.23
Sox1P53783 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Gm18622-201ENSMUST00000219361 595 ntBASIC16.48■□□□□ 0.23
Sox1P53783 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.48■□□□□ 0.23
Sox1P53783 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Sox1P53783 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox1P53783 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Sox1P53783 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.47■□□□□ 0.23
Sox1P53783 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC16.47■□□□□ 0.23
Sox1P53783 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC16.47■□□□□ 0.23
Sox1P53783 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Sox1P53783 Gm43433-201ENSMUST00000196573 481 ntBASIC16.47■□□□□ 0.23
Sox1P53783 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC16.47■□□□□ 0.23
Sox1P53783 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Sox1P53783 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC16.47■□□□□ 0.23
Sox1P53783 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Sox1P53783 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Sox1P53783 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sox1P53783 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Sox1P53783 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC16.46■□□□□ 0.23
Sox1P53783 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Sox1P53783 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Sox1P53783 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Gm27430-201ENSMUST00000184585 107 ntBASIC16.46■□□□□ 0.23
Sox1P53783 Gm44333-201ENSMUST00000197168 107 ntBASIC16.46■□□□□ 0.23
Sox1P53783 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC16.46■□□□□ 0.23
Sox1P53783 Wdyhv1-203ENSMUST00000226889 394 ntBASIC16.46■□□□□ 0.23
Sox1P53783 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Gm25857-201ENSMUST00000082788 129 ntBASIC16.46■□□□□ 0.23
Sox1P53783 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Sox1P53783 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.46■□□□□ 0.23
Sox1P53783 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sox1P53783 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Gm45203-201ENSMUST00000206384 1831 ntBASIC16.45■□□□□ 0.22
Sox1P53783 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.45■□□□□ 0.22
Sox1P53783 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC16.45■□□□□ 0.22
Sox1P53783 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.45■□□□□ 0.22
Sox1P53783 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.45■□□□□ 0.22
Sox1P53783 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC16.45■□□□□ 0.22
Sox1P53783 Gm20553-201ENSMUST00000204205 844 ntBASIC16.45■□□□□ 0.22
Sox1P53783 Gm5628-201ENSMUST00000222318 1049 ntBASIC16.45■□□□□ 0.22
Sox1P53783 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC16.45■□□□□ 0.22
Sox1P53783 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Sox1P53783 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Sox1P53783 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sox1P53783 Gm42934-201ENSMUST00000196920 1345 ntBASIC16.45■□□□□ 0.22
Sox1P53783 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sox1P53783 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Sox1P53783 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
Sox1P53783 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sox1P53783 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sox1P53783 Gm43213-201ENSMUST00000151866 1790 ntBASIC16.44■□□□□ 0.22
Sox1P53783 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.44■□□□□ 0.22
Sox1P53783 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms