Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Msx1P13297 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Msx1P13297 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Msx1P13297 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC15.29■□□□□ 0.04
Msx1P13297 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Msx1P13297 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Msx1P13297 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC15.29■□□□□ 0.04
Msx1P13297 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC15.29■□□□□ 0.04
Msx1P13297 Gm28196-201ENSMUST00000187719 640 ntBASIC15.29■□□□□ 0.04
Msx1P13297 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.29■□□□□ 0.04
Msx1P13297 AC108846.1-201ENSMUST00000214531 513 ntBASIC15.29■□□□□ 0.04
Msx1P13297 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Gm43548-201ENSMUST00000197139 2353 ntBASIC15.29■□□□□ 0.04
Msx1P13297 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
Msx1P13297 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Msx1P13297 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Msx1P13297 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC15.29■□□□□ 0.04
Msx1P13297 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Msx1P13297 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Msx1P13297 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Gm1818-201ENSMUST00000169406 1184 ntBASIC15.28■□□□□ 0.04
Msx1P13297 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC15.28■□□□□ 0.04
Msx1P13297 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC15.28■□□□□ 0.04
Msx1P13297 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Msx1P13297 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
Msx1P13297 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Msx1P13297 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Msx1P13297 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Msx1P13297 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Msx1P13297 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msx1P13297 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC15.28■□□□□ 0.04
Msx1P13297 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Msx1P13297 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC15.27■□□□□ 0.04
Msx1P13297 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC15.27■□□□□ 0.04
Msx1P13297 Gm44450-201ENSMUST00000199528 114 ntBASIC15.27■□□□□ 0.04
Msx1P13297 Gm44711-201ENSMUST00000205414 1264 ntBASIC15.27■□□□□ 0.04
Msx1P13297 AC138767.1-201ENSMUST00000222661 415 ntBASIC15.27■□□□□ 0.04
Msx1P13297 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msx1P13297 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msx1P13297 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msx1P13297 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Msx1P13297 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msx1P13297 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.03
Msx1P13297 Zfp264-201ENSMUST00000208656 1563 ntBASIC15.27■□□□□ 0.03
Msx1P13297 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msx1P13297 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Msx1P13297 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms