Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Hoxd3P09027 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
Hoxd3P09027 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Hoxd3P09027 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Gm7935-201ENSMUST00000100555 1278 ntBASIC12.56□□□□□ -0.4
Hoxd3P09027 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC12.56□□□□□ -0.4
Hoxd3P09027 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Gm43347-201ENSMUST00000200226 580 ntBASIC12.56□□□□□ -0.4
Hoxd3P09027 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Gm11841-201ENSMUST00000117060 1963 ntBASIC12.56□□□□□ -0.4
Hoxd3P09027 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC12.55□□□□□ -0.4
Hoxd3P09027 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 AC114585.2-202ENSMUST00000228094 426 ntBASIC12.55□□□□□ -0.4
Hoxd3P09027 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Gm7461-201ENSMUST00000058918 827 ntBASIC12.55□□□□□ -0.4
Hoxd3P09027 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Hoxd3P09027 Hivep3-201ENSMUST00000084306 2973 ntBASIC12.55□□□□□ -0.4
Hoxd3P09027 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hoxd3P09027 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Hoxd3P09027 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Hoxd3P09027 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC12.54□□□□□ -0.4
Hoxd3P09027 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Gm12644-201ENSMUST00000119935 606 ntBASIC12.54□□□□□ -0.4
Hoxd3P09027 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC12.54□□□□□ -0.4
Hoxd3P09027 Gm44454-201ENSMUST00000198541 138 ntBASIC12.54□□□□□ -0.4
Hoxd3P09027 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC12.54□□□□□ -0.4
Hoxd3P09027 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC12.54□□□□□ -0.4
Hoxd3P09027 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC12.54□□□□□ -0.4
Hoxd3P09027 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Hoxd3P09027 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hoxd3P09027 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms