Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MIR5692A1-201ENST00000580523 69 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 BNIP3P30-201ENST00000601184 574 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC087045.1-201ENST00000605856 382 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AL359880.1-201ENST00000621879 266 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC010297.1-201ENST00000623948 149 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC068137.4-201ENST00000638485 296 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC069528.2-201ENST00000624849 1991 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 RNU6-996P-201ENST00000365438 107 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 RNU6-45P-201ENST00000384471 107 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 RNU6-1127P-201ENST00000384580 107 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 CIR1P3-201ENST00000405137 479 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 AL162578.1-201ENST00000406202 378 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 AC011005.2-201ENST00000487324 359 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 RPL23AP94-201ENST00000512518 302 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 SNORA40.12-201ENST00000516329 111 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 AP001893.2-201ENST00000526949 202 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 MIR5583-1-201ENST00000580941 59 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 uc_338.14-201ENST00000613162 166 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 AC011890.2-201ENST00000613393 294 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 RMST_4.1-201ENST00000616886 107 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 AL354950.2-201ENST00000617939 290 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 IGHVIII-44-202ENST00000636235 289 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 AL354685.2-201ENST00000448218 1447 ntBASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
CPSF3Q9UKF6 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 MTND5P30-201ENST00000452896 1731 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 RNU6-1280P-201ENST00000365211 107 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 RNU6-517P-201ENST00000384362 110 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 RNU6-19P-201ENST00000384718 107 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 RNU6-780P-201ENST00000391030 104 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 RNU2-3P-201ENST00000410144 191 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 RNU6-607P-201ENST00000411283 108 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 CYCSP33-201ENST00000414485 327 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 PTGES3P4-201ENST00000426243 356 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC004383.1-201ENST00000438135 289 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC016691.1-201ENST00000441321 413 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 MTND1P1-201ENST00000445453 368 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 snoU109.2-201ENST00000459316 135 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC104136.1-201ENST00000512969 394 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 ACA59.2-201ENST00000517061 156 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 BTF3P12-201ENST00000519620 469 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC104383.1-201ENST00000530297 370 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AL512310.1-201ENST00000548639 172 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 HIF1AP1-201ENST00000553642 175 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC009163.5-201ENST00000575421 637 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 LRRC37A5P-203ENST00000580181 585 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 MIR4513-201ENST00000581077 86 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC103810.6-201ENST00000606708 136 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC092954.2-201ENST00000609103 430 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC073534.2-201ENST00000620377 381 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC099654.12-201ENST00000639868 649 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AC004944.1-201ENST00000517807 3059 ntBASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
CPSF3Q9UKF6 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 RNA5SP289-201ENST00000362332 137 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 SNORA25.6-201ENST00000364121 118 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 RNU6-1303P-201ENST00000364841 107 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 RNU6-72P-201ENST00000384285 79 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 SNORA41-201ENST00000384675 132 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 RNU6-220P-201ENST00000390919 107 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 SNORA16.2-201ENST00000390991 127 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 FTH1P15-201ENST00000406984 280 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 BTF3P7-201ENST00000407097 488 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 PGBD4P6-201ENST00000421501 610 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 SUMO1P4-201ENST00000429430 302 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 RPL7P54-201ENST00000438336 674 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 188.8 ms