Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 PRPS1P1-201ENST00000445305 876 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 SNORA59A-201ENST00000459326 152 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AL163973.1-201ENST00000484753 577 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 MTND2P33-201ENST00000506452 1031 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS28Q9UK41 RNU2-69P-201ENST00000516061 100 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AC004486.1-201ENST00000546846 233 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 HIF1AP1-201ENST00000553642 175 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AC027176.1-201ENST00000560204 514 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS28Q9UK41 AC006023.1-201ENST00000603944 259 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AL121917.1-203ENST00000605534 577 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AC017083.3-201ENST00000609955 700 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AL354950.2-201ENST00000617939 290 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 MIR6852-201ENST00000621699 66 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 RMST_7.1-201ENST00000621935 268 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 Z69720.2-201ENST00000624755 279 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 OR5AK4P-201ENST00000635912 903 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.76□□□□□ -1.97
VPS28Q9UK41 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS28Q9UK41 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 RNU6-1010P-201ENST00000362757 107 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 RNU6-78P-201ENST00000362897 107 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 SNORA38-201ENST00000363946 132 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 RNU6-1303P-201ENST00000364841 107 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 MIR196B-201ENST00000384852 84 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 SNORA16.2-201ENST00000390991 127 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC073415.1-201ENST00000449240 153 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC008571.1-201ENST00000467232 300 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 MIR4658-201ENST00000584344 65 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC103591.3-201ENST00000608684 209 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 AC139792.3-201ENST00000623525 224 ntBASIC2.75□□□□□ -1.97
VPS28Q9UK41 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
VPS28Q9UK41 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS28Q9UK41 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VPS28Q9UK41 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS28Q9UK41 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 VTRNA1-1-201ENST00000363120 99 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 Y_RNA.255-201ENST00000364581 97 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 RNU6-622P-201ENST00000384272 103 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 CYCSP48-201ENST00000417124 323 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC074117.2-201ENST00000417130 397 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC003685.2-201ENST00000422795 395 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 EIF4EP4-201ENST00000424916 578 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC236972.1-201ENST00000433225 199 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 AL606489.2-201ENST00000433886 234 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC108938.1-201ENST00000451204 136 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AL109933.2-201ENST00000452651 260 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC117503.1-201ENST00000472241 394 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC090525.1-201ENST00000479116 478 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC107401.1-201ENST00000503426 685 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC008526.1-201ENST00000509149 338 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 SNORA31.23-201ENST00000517219 133 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 MTCO3P23-201ENST00000561363 289 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC105137.2-201ENST00000569073 466 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 MIR3941-201ENST00000582572 103 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AC073410.2-201ENST00000603240 332 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AP001330.5-201ENST00000607176 411 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 AL158209.2-201ENST00000619266 216 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 MIR6863-201ENST00000636112 90 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS28Q9UK41 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS28Q9UK41 AL354685.2-201ENST00000448218 1447 ntBASIC2.74□□□□□ -1.97
VPS28Q9UK41 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
VPS28Q9UK41 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
VPS28Q9UK41 SNORA25.6-201ENST00000364121 118 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 RNA5SP125-201ENST00000364843 120 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 Y_RNA.381-201ENST00000365666 102 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 Y_RNA.399-201ENST00000383955 105 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 AL356057.3-201ENST00000402607 340 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS28Q9UK41 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS28Q9UK41 DNAJC19P4-201ENST00000440115 345 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 CACYBPP2-201ENST00000453625 678 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 AP000705.1-201ENST00000454567 350 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS28Q9UK41 AP001025.1-201ENST00000486139 332 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms