Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MTCO3P5-201ENST00000433620 714 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 MTCO2P16-201ENST00000436962 677 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 RPL32P28-201ENST00000443577 397 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 IFNA11P-201ENST00000446352 526 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AL031659.1-201ENST00000447075 539 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 RNU6-717P-201ENST00000459076 104 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 IGLV3-17-201ENST00000519099 244 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AC009127.3-201ENST00000570531 403 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 MIR4648-201ENST00000580107 72 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 RPS15AP11-201ENST00000594193 385 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 SNRPGP19-201ENST00000603826 189 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AC087045.1-201ENST00000605856 382 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AC069294.1-201ENST00000608397 350 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AC011155.2-201ENST00000623202 216 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 U6.114-201ENST00000636407 96 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AP000553.5-201ENST00000641933 54 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 MTND5P17-201ENST00000418405 1603 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 RNU6-486P-201ENST00000363116 107 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 RNU6-108P-201ENST00000365558 107 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 SNORA70B-201ENST00000384210 135 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 RNU6-748P-201ENST00000384648 107 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AL079342.1-201ENST00000401460 267 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 RN7SKP192-201ENST00000411291 327 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 MTCYBP5-201ENST00000423752 1135 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC133104.1-201ENST00000429100 218 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AL627311.1-201ENST00000431514 115 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AL445646.1-201ENST00000431784 216 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 MTND4P32-201ENST00000437189 1237 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AL360271.2-201ENST00000447710 161 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AL162395.1-201ENST00000457882 422 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 KLF3P2-201ENST00000465138 268 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 RPL36AP48-201ENST00000485521 314 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC010424.1-201ENST00000506336 297 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 RNA5SP112-201ENST00000515937 99 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AP003072.2-201ENST00000527756 676 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC121758.2-201ENST00000553271 193 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC006362.1-201ENST00000567392 174 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 RPS3AP23-202ENST00000574601 686 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 MIR4775-201ENST00000581168 75 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC072046.2-201ENST00000618366 268 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC099842.1-201ENST00000619919 596 ntBASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.33□□□□□ -2.04
VPS54Q9P1Q0 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 Y_RNA.77-201ENST00000362962 107 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 RNU6-1097P-201ENST00000363586 107 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 RNU6-384P-201ENST00000364900 104 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 MIR10A-201ENST00000385043 110 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 U6atac.2-201ENST00000408644 118 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 PGBD4P6-201ENST00000421501 610 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 MTCO2P34-201ENST00000421994 607 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 C1DP4-201ENST00000455429 424 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AC080013.2-201ENST00000460866 323 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AC025033.1-201ENST00000463883 194 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 RPL22P13-201ENST00000493291 347 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 RNU6-430P-201ENST00000517078 107 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AP000873.5-201ENST00000533906 236 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 MIR5089-201ENST00000580047 84 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AC009314.1-201ENST00000603871 304 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 YWHAEP7-203ENST00000622054 312 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 AL390237.1-201ENST00000404226 1415 ntBASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS54Q9P1Q0 Z75746.1-201ENST00000440243 2080 ntBASIC2.31□□□□□ -2.04
VPS54Q9P1Q0 RNU6-858P-201ENST00000362436 107 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms