Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 HIGD1AP2-201ENST00000446367 280 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 RN7SL636P-201ENST00000497504 294 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 MTND3P5-201ENST00000512798 333 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 MIR892C-201ENST00000516410 77 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 SNORA31.18-201ENST00000517043 134 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 AC027176.1-201ENST00000560204 514 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 MYL12BP1-201ENST00000569826 507 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 AL670379.10-201ENST00000604330 253 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 AL670379.9-201ENST00000605428 253 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 NDUFA8P1-201ENST00000605525 367 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 AL021997.1-201ENST00000605757 193 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 uc_338.14-201ENST00000613162 166 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 MIR6766-201ENST00000622641 72 ntBASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
EXOSC3Q9NQT5 MTND4P27-201ENST00000450813 1354 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AL359854.1-201ENST00000614203 1594 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 MTND5P26-201ENST00000426018 1752 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC010329.5-201ENST00000623497 2174 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 RNU6-942P-201ENST00000363002 107 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 Y_RNA.409-201ENST00000383990 98 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 Y_RNA.436-201ENST00000384097 102 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 RNU6-1103P-201ENST00000384150 107 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 RNU6-1140P-201ENST00000410517 106 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 RNU4-46P-201ENST00000410818 138 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC009963.1-201ENST00000417265 157 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC010975.2-201ENST00000427781 588 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AL031659.1-201ENST00000447075 539 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AL441985.1-201ENST00000457727 251 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 RNU7-63P-201ENST00000459054 62 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC112771.1-201ENST00000463581 102 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 HMGB1P30-201ENST00000492455 606 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 HMGB1P29-201ENST00000505659 499 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 SMURF2P1-201ENST00000514992 481 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 RPPH1-2P-201ENST00000516688 293 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 RN7SKP219-201ENST00000516825 296 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AP005435.4-201ENST00000529514 284 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 BNIP3P6-201ENST00000549284 499 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC024909.2-201ENST00000553035 286 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC046143.2-201ENST00000609789 160 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC004908.3-201ENST00000610248 625 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AC243829.7-201ENST00000633081 225 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 AL365361.1-201ENST00000566942 3481 ntBASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.11□□□□□ -2.07
EXOSC3Q9NQT5 Y_RNA.194-201ENST00000363985 102 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 RNU4-40P-201ENST00000364351 143 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 RNU4-24P-201ENST00000364565 139 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 RNU1-51P-201ENST00000365345 176 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 RNU6-259P-201ENST00000383999 107 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 SNORA67.4-201ENST00000384688 142 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 RNU2-3P-201ENST00000410144 191 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 RNU2-16P-201ENST00000410712 136 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 RNU2-25P-201ENST00000411041 191 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 CYCSP33-201ENST00000414485 327 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 RPS15AP28-201ENST00000435088 386 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AL356010.1-201ENST00000456364 102 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 MED28P2-201ENST00000475771 317 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 RPL36AP48-201ENST00000485521 314 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC079804.2-201ENST00000490376 200 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 MTND2P33-201ENST00000506452 1031 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 SCARNA3-201ENST00000517097 143 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AP004607.1-201ENST00000524456 203 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 OR5AQ1P-201ENST00000527596 927 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC121758.2-201ENST00000553271 193 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC009163.5-201ENST00000575421 637 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 MIR5583-1-201ENST00000580941 59 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 MIR5194-201ENST00000582634 120 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 AC138627.2-201ENST00000624202 601 ntBASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.1□□□□□ -2.07
EXOSC3Q9NQT5 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 160 ms