Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 SNORA75B-201ENST00000384053 137 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 RNU6-629P-201ENST00000384061 103 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 Y_RNA.645-201ENST00000391229 102 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 MIR1289-1-201ENST00000408836 144 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 MTCYBP10-201ENST00000424905 650 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 MTCO1P39-201ENST00000426148 480 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 MTATP6P4-201ENST00000427725 675 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 CALM2P2-201ENST00000428512 440 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 CST9LP2-201ENST00000437612 320 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 GSTA11P-201ENST00000452866 669 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 RPL21P8-201ENST00000465083 535 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 AC104472.2-201ENST00000469035 601 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 AC087884.1-201ENST00000469738 328 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 AC026782.1-201ENST00000512952 449 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 Y_RNA.670-201ENST00000516255 105 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 MIR5692C1-201ENST00000585309 91 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 MIR7106-201ENST00000612419 65 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 Z69720.2-201ENST00000624755 279 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 AC004925.1-201ENST00000624256 2706 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 Y_RNA.149-201ENST00000363558 117 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 Y_RNA.252-201ENST00000364556 101 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 Y_RNA.364-201ENST00000365532 101 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 DYNLT3P1-201ENST00000378574 347 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 SNORA54-201ENST00000384281 123 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 MIR591-201ENST00000385290 95 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 NDUFS5P1-201ENST00000405668 289 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AC009310.1-201ENST00000414414 451 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AL669831.1-202ENST00000428504 417 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AC117503.1-201ENST00000472241 394 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 RPL23AP55-201ENST00000498163 452 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 HMGB1P22-201ENST00000505315 124 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 MTND4LP22-201ENST00000508209 276 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 SNORA25.10-201ENST00000515926 124 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 RNU6-1016P-201ENST00000516689 94 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AP006587.4-201ENST00000526053 529 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 BNIP3P16-201ENST00000589779 534 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AC104695.3-201ENST00000604052 296 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AC009229.3-201ENST00000608056 282 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 SDR42E1P2-201ENST00000614861 481 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 MIR6128-201ENST00000615528 109 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 PLCE1P1-201ENST00000622094 305 ntBASIC3.23□□□□□ -1.89
EBF3Q9H4W6 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
EBF3Q9H4W6 AC093010.3-201ENST00000570269 15214 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RNU6-562P-201ENST00000362731 107 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 SNORA5B-201ENST00000363786 132 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 SNORA71.1-201ENST00000364523 117 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RNU6-702P-201ENST00000364982 107 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RNU6-701P-201ENST00000384059 107 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RNU6-1181P-201ENST00000384191 106 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 SNORD15B-201ENST00000384714 146 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 SNORD70.1-201ENST00000391007 85 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 TOMM22P1-201ENST00000418578 312 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AC107083.1-201ENST00000439643 279 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RPL26P6-201ENST00000440913 438 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RPS24P6-201ENST00000452670 400 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AC010655.3-201ENST00000478818 450 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 Y_RNA.661-201ENST00000516003 99 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RNU6-390P-201ENST00000516259 103 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RNU6-1069P-201ENST00000516612 133 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RNU6-699P-201ENST00000517081 110 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 RN7SKP258-201ENST00000517151 304 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 ERHP1-201ENST00000523006 310 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AL161670.1-201ENST00000554348 137 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 H3F3AP1-201ENST00000559984 334 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AC018889.1-201ENST00000605372 397 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AC006157.1-201ENST00000611750 366 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 AL589994.2-201ENST00000621124 579 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 SNORA50A-202ENST00000629536 136 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms