Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-82P-201ENST00000363970 107 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 Y_RNA.248-201ENST00000364501 109 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 Y_RNA.295-201ENST00000364918 102 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-715P-201ENST00000365204 103 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-393P-201ENST00000384475 107 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-1072P-201ENST00000384703 107 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-443P-201ENST00000384780 107 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 MIR514A2-201ENST00000385131 88 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 MIR514A3-201ENST00000385132 88 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RNU6ATAC34P-201ENST00000408879 121 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-1068P-201ENST00000410958 103 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-373P-201ENST00000411247 98 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AL353621.1-201ENST00000418219 243 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 SKA2P1-201ENST00000425592 390 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AL669831.1-202ENST00000428504 417 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 GTF2IP13-201ENST00000438487 386 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AL513328.1-201ENST00000446460 224 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AL360271.2-201ENST00000447710 161 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RPS29P25-201ENST00000481709 171 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AC090255.1-201ENST00000495779 349 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AF213884.2-201ENST00000510417 903 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AC112206.3-201ENST00000514578 389 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AC106782.4-201ENST00000568264 210 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 RBM11P1-201ENST00000604951 799 ntBASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
CCDC28BQ9BUN5 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 RNU1-51P-201ENST00000365345 176 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-38P-201ENST00000384085 107 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-45P-201ENST00000384471 107 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 MIR578-201ENST00000384828 96 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 MIR27B-201ENST00000385129 97 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 SNORD70.1-201ENST00000391007 85 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 RPL21P90-201ENST00000415692 466 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AL353729.1-201ENST00000425044 720 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 SRIP2-201ENST00000428470 166 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AL078601.1-201ENST00000444542 271 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 RPS15AP27-201ENST00000449183 343 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 MTND3P16-201ENST00000452205 344 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-333P-201ENST00000459117 107 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AC128713.1-201ENST00000471495 306 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AC092989.1-201ENST00000481235 277 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 FAM92A1P2-202ENST00000504766 877 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AC114786.4-201ENST00000508771 728 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-572P-201ENST00000516724 80 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 SNORA31.19-201ENST00000517079 126 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AC092325.1-201ENST00000566449 554 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 OR1M4P-201ENST00000589199 287 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AL121917.1-203ENST00000605534 577 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AL161629.2-201ENST00000615347 275 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 RMST_4.1-201ENST00000616886 107 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 OR4G1P-203ENST00000641984 1631 ntBASIC2.35□□□□□ -2.03
CCDC28BQ9BUN5 AC004520.1-201ENST00000608362 1413 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 AC110491.1-201ENST00000562191 2010 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 AC016717.2-201ENST00000609089 5141 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 Y_RNA.231-201ENST00000364358 102 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 SNORA75B-201ENST00000384053 137 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 Y_RNA.480-201ENST00000384364 102 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-166P-201ENST00000384371 107 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 Y_RNA.623-201ENST00000411128 95 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 OR9R1P-201ENST00000412200 877 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 BPY2DP-201ENST00000422208 265 ntBASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC28BQ9BUN5 MRPS10P2-201ENST00000431226 381 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms