Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU6-9-201ENST00000384776 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-33P-201ENST00000384793 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 RN7SKP220-201ENST00000410611 288 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 HMGB1P31-201ENST00000437242 427 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 AL161651.1-201ENST00000440882 223 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 GSTA11P-201ENST00000452866 669 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 BTF3P15-201ENST00000455606 336 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-189P-201ENST00000516120 101 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RPL7P20-201ENST00000520308 745 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 AC025281.1-201ENST00000567026 265 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 LARP7P3-201ENST00000579888 337 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 BNIP3P25-201ENST00000596023 559 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 AC087045.1-201ENST00000605856 382 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-6P-201ENST00000606623 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
NKX3-1Q99801 AC103705.1-201ENST00000619013 241 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.45□□□□□ -2.02
NKX3-1Q99801 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.45□□□□□ -2.02
NKX3-1Q99801 AC010889.1-201ENST00000566193 2666 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 RNU6-942P-201ENST00000363002 107 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 RNU6-1280P-201ENST00000365211 107 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 MIR767-201ENST00000390228 109 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 RNU6-750P-201ENST00000390946 107 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 RNA5SP354-201ENST00000391247 136 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 AL122016.1-201ENST00000403365 367 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 FTH1P15-201ENST00000406984 280 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 AC025750.2-201ENST00000442609 450 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 Z96811.1-201ENST00000445880 108 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 AP001486.1-201ENST00000463339 476 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 RPS27AP9-201ENST00000477681 438 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 Y_RNA.654-201ENST00000497848 106 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 AC098799.2-201ENST00000509466 868 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 SCGB1D5P-201ENST00000515134 247 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 SNORA14.1-201ENST00000516113 141 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 RNU6-358P-201ENST00000516564 75 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 SCARNA13-201ENST00000516672 275 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 HSPE1P20-201ENST00000538133 289 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 AL133241.1-201ENST00000556832 487 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 MTCO3P13-201ENST00000577757 781 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 AC091152.3-201ENST00000604227 325 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 APOOP1-201ENST00000604695 592 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 AC090115.4-201ENST00000609970 188 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 UCA1.1-201ENST00000620952 75 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 RMST_7.1-201ENST00000621935 268 ntBASIC2.44□□□□□ -2.02
NKX3-1Q99801 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.44□□□□□ -2.02
NKX3-1Q99801 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
NKX3-1Q99801 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 Y_RNA.86-201ENST00000363020 111 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 RNU6-1252P-201ENST00000363054 104 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 RNU6-82P-201ENST00000363970 107 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 SNORA9.2-201ENST00000365361 133 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 U3.37-201ENST00000408528 213 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 RNU4-26P-201ENST00000410270 107 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 RPLP0P7-201ENST00000416050 667 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 AC009296.1-201ENST00000443146 155 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 S100A11P2-201ENST00000467589 312 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 RN7SL297P-201ENST00000483161 293 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 HIGD1AP13-201ENST00000509878 289 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 MRPS36P2-201ENST00000512569 299 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 AF235103.2-201ENST00000525753 346 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 MIR5692C1-201ENST00000585309 91 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 NRBF2P5-201ENST00000603087 788 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 AL355877.2-201ENST00000603670 358 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms