Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ADI1P3-201ENST00000549509 470 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 AL118558.2-201ENST00000556294 238 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 AL138976.2-201ENST00000563989 694 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 MIR5194-201ENST00000582634 120 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
USP28Q96RU2 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.64□□□□□ -1.99
USP28Q96RU2 FO624990.1-201ENST00000636373 85 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 Z99571.1-201ENST00000636677 394 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 ZNF720P1-201ENST00000562403 1939 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 NACAP2-201ENST00000318548 624 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 SNORA5B-201ENST00000363786 132 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 RNU6-877P-201ENST00000383868 107 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 MIR483-201ENST00000385070 76 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
USP28Q96RU2 AL122016.1-201ENST00000403365 367 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 RNA5SP111-201ENST00000411386 101 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.63□□□□□ -1.99
USP28Q96RU2 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.63□□□□□ -1.99
USP28Q96RU2 HMGB1P27-201ENST00000431429 603 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 Z82210.1-201ENST00000440037 231 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.63□□□□□ -1.99
USP28Q96RU2 CECR9-201ENST00000453421 199 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.63□□□□□ -1.99
USP28Q96RU2 AC073901.1-201ENST00000462471 408 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 MTCYBP18-201ENST00000501056 747 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.63□□□□□ -1.99
USP28Q96RU2 RNA5SP290-201ENST00000517133 127 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.63□□□□□ -1.99
USP28Q96RU2 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.63□□□□□ -1.99
USP28Q96RU2 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.63□□□□□ -1.99
USP28Q96RU2 MIR5007-201ENST00000583098 95 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 AC011471.1-201ENST00000585766 187 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.63□□□□□ -1.99
USP28Q96RU2 AL049779.4-201ENST00000604500 156 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.63□□□□□ -1.99
USP28Q96RU2 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.63□□□□□ -1.99
USP28Q96RU2 MIR6766-201ENST00000622641 72 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.63□□□□□ -1.99
USP28Q96RU2 AC005336.3-201ENST00000623833 2679 ntBASIC2.63□□□□□ -1.99
USP28Q96RU2 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
USP28Q96RU2 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.62□□□□□ -1.99
USP28Q96RU2 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.62□□□□□ -1.99
USP28Q96RU2 SNORA68.1-201ENST00000364537 132 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 RNY3P14-201ENST00000384309 102 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.62□□□□□ -1.99
USP28Q96RU2 AL160275.3-201ENST00000423876 471 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 SUMO1P4-201ENST00000429430 302 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 RPL36AP53-201ENST00000432891 316 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 AL445687.1-201ENST00000439946 251 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.62□□□□□ -1.99
USP28Q96RU2 MTND3P16-201ENST00000452205 344 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 RPL12P25-201ENST00000455592 494 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 RPL39P36-201ENST00000490784 156 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 AL160314.1-201ENST00000490836 438 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 ATP5F1P5-201ENST00000526403 760 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 RANP3-201ENST00000530970 276 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.62□□□□□ -1.99
USP28Q96RU2 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.62□□□□□ -1.99
USP28Q96RU2 MIR4424-201ENST00000585257 86 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 AC136601.2-201ENST00000604356 474 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 DUSP12P1-201ENST00000612874 516 ntBASIC2.62□□□□□ -1.99
USP28Q96RU2 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
USP28Q96RU2 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USP28Q96RU2 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USP28Q96RU2 MTND4P35-201ENST00000604257 1375 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.61□□□□□ -1.99
USP28Q96RU2 MAPK10-266ENST00000641066 6555 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AC093536.2-201ENST00000565257 1406 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AC004520.1-201ENST00000608362 1413 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USP28Q96RU2 FTLP6-201ENST00000355274 422 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 Y_RNA.245-201ENST00000364493 95 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 SNORA75B-201ENST00000384053 137 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 SNORD37.1-201ENST00000390968 65 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 RNU2-29P-201ENST00000410423 189 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.61□□□□□ -1.99
USP28Q96RU2 AC092047.1-201ENST00000424997 240 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 MTATP6P23-201ENST00000440153 476 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.61□□□□□ -1.99
USP28Q96RU2 AC104058.1-201ENST00000448028 297 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 FABP5P15-201ENST00000453566 214 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 RNU6-953P-201ENST00000459154 107 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 RN7SL636P-201ENST00000497504 294 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.61□□□□□ -1.99
USP28Q96RU2 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.61□□□□□ -1.99
USP28Q96RU2 RNA5SP291-201ENST00000517222 105 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.61□□□□□ -1.99
USP28Q96RU2 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.61□□□□□ -1.99
USP28Q96RU2 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.61□□□□□ -1.99
USP28Q96RU2 AC105137.2-201ENST00000569073 466 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AC009163.5-201ENST00000575421 637 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 MIR3117-201ENST00000584034 78 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 MIR3616-201ENST00000584070 92 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AC006023.1-201ENST00000603944 259 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AL359547.2-201ENST00000615810 418 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 AL512643.1-201ENST00000635735 524 ntBASIC2.61□□□□□ -1.99
USP28Q96RU2 CASC19-280ENST00000642102 1351 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms