Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 MIR676-201ENST00000390702 67 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 RNU6-550P-201ENST00000391057 101 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL030996.1-201ENST00000411430 235 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 RPL21P90-201ENST00000415692 466 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC009963.1-201ENST00000417265 157 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 C1DP2-201ENST00000418167 426 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL139413.1-201ENST00000421309 217 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL356320.1-201ENST00000429616 163 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL358934.1-201ENST00000432346 324 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 MTCO1P19-201ENST00000443487 500 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL136380.1-201ENST00000447970 162 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 NDUFB1P2-201ENST00000449477 176 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC003071.1-201ENST00000451219 789 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 BTF3P15-201ENST00000455606 336 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 snoU109.1-201ENST00000459339 135 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC112771.1-201ENST00000463581 102 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC055731.1-201ENST00000474387 401 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC114781.4-201ENST00000513707 639 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 Y_RNA.687-201ENST00000516558 91 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 RNA5SP364-201ENST00000516938 78 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 RNU6-445P-201ENST00000516949 107 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC137800.2-201ENST00000574375 120 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC105245.1-201ENST00000581934 244 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC087045.1-201ENST00000605856 382 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 Z69908.1-201ENST00000622603 247 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC244517.12-201ENST00000623581 663 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 MIR3974-201ENST00000637126 96 ntBASIC1.84□□□□□ -2.11
CCDC54Q8NEL0 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
CCDC54Q8NEL0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 Z75746.1-201ENST00000440243 2080 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 RNU6-179P-201ENST00000363350 107 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 Y_RNA.201-201ENST00000364052 96 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 RNU1-91P-201ENST00000364746 163 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 RNU6-1303P-201ENST00000364841 107 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 RNU6-108P-201ENST00000365558 107 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 RNU6-1179P-201ENST00000384667 107 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 MIR147B-201ENST00000390185 80 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 U6atac.2-201ENST00000408644 118 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 RNU2-8P-201ENST00000410727 190 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL353621.1-201ENST00000418219 243 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC090960.1-201ENST00000421072 306 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 PGBD4P6-201ENST00000421501 610 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 BX276092.3-201ENST00000424182 230 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC008267.5-201ENST00000424928 265 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 MTATP6P17-201ENST00000431030 672 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 MTCO2P11-201ENST00000431069 680 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL627311.1-201ENST00000431514 115 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 GPR143P-201ENST00000434155 205 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 MTND4P32-201ENST00000437189 1237 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC104058.1-201ENST00000448028 297 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL021397.1-201ENST00000451806 248 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 TPT1P7-201ENST00000458300 517 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC080013.2-201ENST00000460866 323 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC092436.1-201ENST00000506450 503 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 RNU5B-3P-201ENST00000516601 115 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 OR5AL2P-201ENST00000532185 920 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC007229.1-201ENST00000590455 412 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC040904.1-201ENST00000590850 223 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 BNIP3P22-201ENST00000593399 556 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL096840.1-201ENST00000603287 93 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL713866.2-201ENST00000603579 219 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC025449.1-201ENST00000603896 529 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL670379.10-201ENST00000604330 253 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL670379.9-201ENST00000605428 253 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 RMST_7.1-201ENST00000621935 268 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC138649.3-201ENST00000622154 254 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 DUXAP9-208ENST00000622815 614 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AC097520.1-201ENST00000624435 385 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms